Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 2.5e-36 154.8 74 100.0
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 8.1e-11 70.1 33 87.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 2.4e-10 68.6 33 87.9
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 2.4e-10 68.6 33 87.9
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.4e-10 68.6 33 87.9
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.4e-10 68.6 33 87.9
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 2.4e-10 68.6 33 87.9
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 2.4e-10 68.6 33 87.9
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 3.1e-10 68.2 33 84.8
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 3.1e-10 68.2 33 84.8
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 3.1e-10 68.2 33 87.9
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 4.0e-10 67.8 33 84.8
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 4.0e-10 67.8 33 84.8
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.0e-10 67.8 33 84.8
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 4.0e-10 67.8 33 84.8
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 4.0e-10 67.8 33 84.8
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 5.3e-10 67.4 33 84.8
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 5.3e-10 67.4 33 84.8
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 5.3e-10 67.4 33 84.8
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 5.3e-10 67.4 33 84.8
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 5.3e-10 67.4 33 84.8
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 6.9e-10 67.0 33 84.8
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 6.9e-10 67.0 33 84.8
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 6.9e-10 67.0 33 81.8
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 6.9e-10 67.0 33 81.8
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 6.9e-10 67.0 33 81.8
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 84.8
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 84.8
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 84.8
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 81.8
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 81.8
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 81.8
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.2e-09 66.2 33 81.8
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.5e-09 65.9 33 81.8
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 1.5e-09 65.9 33 81.8
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.5e-09 65.9 32 87.5
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 2.0e-09 65.5 33 81.8
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 2.0e-09 65.5 33 84.8
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 2.0e-09 65.5 31 90.3
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 2.6e-09 65.1 33 78.8
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 2.6e-09 65.1 33 84.8
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 2.6e-09 65.1 33 78.8
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 3.4e-09 64.7 33 81.8
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 3.4e-09 64.7 33 78.8
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 4.5e-09 64.3 33 78.8
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 4.5e-09 64.3 33 81.8
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 5.8e-09 63.9 33 78.8
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 5.8e-09 63.9 33 78.8
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 78.8
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 75.8
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 78.8
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 78.8
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 78.8
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 78.8
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 7.6e-09 63.5 33 78.8
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.0e-08 63.2 33 78.8
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 1.0e-08 63.2 33 75.8
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 81.8
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 81.8
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 81.8
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 81.8
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 81.8
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 81.8
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 78.8
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 75.8
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 1.3e-08 62.8 33 75.8
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 1.7e-08 62.4 33 75.8
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.7e-08 62.4 33 78.8
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.2e-08 62.0 33 78.8
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 2.2e-08 62.0 33 78.8
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.2e-08 62.0 33 78.8
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 2.2e-08 62.0 33 78.8
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 2.2e-08 62.0 33 78.8
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 2.2e-08 62.0 33 75.8
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 2.9e-08 61.6 33 75.8
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 2.9e-08 61.6 33 75.8
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 2.9e-08 61.6 33 72.7
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.9e-08 61.6 33 72.7
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 2.9e-08 61.6 33 75.8
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 3.8e-08 61.2 33 72.7
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 3.8e-08 61.2 33 78.8
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 4.9e-08 60.8 33 72.7
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 33 72.7
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 78.1
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 75.0
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 75.0
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 75.0
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 75.0
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 75.0
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.9e-08 60.8 32 75.0
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 4.9e-08 60.8 32 75.0
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 4.9e-08 60.8 32 75.0
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 4.9e-08 60.8 35 77.1
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 8.4e-08 60.1 33 72.7
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 8.4e-08 60.1 33 72.7
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 8.4e-08 60.1 33 72.7
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 8.4e-08 60.1 33 72.7
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 8.4e-08 60.1 30 83.3
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 8.4e-08 60.1 33 75.8
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.1e-07 59.7 33 72.7
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.4e-07 59.3 33 72.7
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.4e-07 59.3 32 71.9
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 1.9e-07 58.9 33 69.7
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.9e-07 58.9 33 69.7
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 3.2e-07 58.2 33 66.7
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 9.3e-07 56.6 33 72.7
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 1.6e-06 55.8 33 69.7
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 4.6e-06 54.3 33 75.8
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 7.9e-06 53.5 30 73.3


User provided reference genes

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