Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 7.8e-205 716.8 347 100.0
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 4.1e-190 667.9 345 93.0
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 6.0e-189 664.1 345 92.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.5e-179 632.1 345 87.5
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.6e-179 630.9 345 87.2
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.4e-176 621.3 345 86.4
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.2e-174 615.1 347 85.9
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.2e-174 615.1 347 85.6
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 3.8e-167 591.7 345 79.7
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 5.6e-163 577.8 346 80.6
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.4e-161 572.4 345 78.0
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 6.9e-161 570.9 346 77.7
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.5e-160 569.7 345 79.4
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.6e-160 568.9 345 79.4
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 3.4e-160 568.5 345 77.4
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 4.5e-160 568.2 349 79.7
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.9e-159 564.7 345 77.7
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 4.9e-159 564.7 343 77.3
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.4e-158 563.1 347 77.2
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 2.5e-158 562.4 376 74.5
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 5.5e-158 561.2 345 77.1
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 1.2e-157 560.1 344 78.5
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 6.0e-157 557.8 347 78.1
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 7.9e-157 557.4 343 76.4
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 5.1e-156 554.7 347 76.1
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 6.7e-156 554.3 347 76.7
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 1.1e-155 553.5 345 77.7
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.1e-155 553.5 344 78.2
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.5e-155 553.1 343 76.7
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.9e-155 552.7 343 76.4
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 4.3e-155 551.6 347 76.1
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 7.4e-155 550.8 347 77.2
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.3e-154 550.1 338 78.1
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.6e-154 549.7 345 77.4
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 2.8e-154 548.9 344 76.5
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 1.1e-153 547.0 342 75.7
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.4e-153 546.6 345 74.2
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.5e-152 543.1 348 75.9
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.4e-152 542.0 344 75.9
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.8e-152 541.2 339 74.9
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.0e-151 540.4 344 75.6
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.3e-151 540.0 347 75.8
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.7e-151 539.7 345 76.2
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.7e-151 539.7 345 74.5
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.2e-151 539.3 345 74.8
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 8.4e-151 537.3 349 75.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.4e-150 536.6 345 75.7
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.4e-150 536.6 344 75.6
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.9e-150 536.2 345 75.7
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 5.5e-150 534.6 348 75.0
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 9.3e-150 533.9 339 73.5
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.6e-149 533.1 347 75.5
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.1e-149 532.7 346 74.9
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 2.1e-149 532.7 340 74.1
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.0e-148 530.4 349 71.9
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.8e-148 529.6 345 74.5
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.8e-148 529.6 340 73.5
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 2.3e-148 529.3 347 74.4
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 3.9e-148 528.5 345 73.0
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 3.9e-148 528.5 345 73.9
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 9.7e-147 523.9 347 74.1
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 6.3e-146 521.2 351 72.6
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 8.2e-146 520.8 327 75.5
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.1e-145 520.4 349 72.5
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 2.4e-145 519.2 345 69.6
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 4.1e-145 518.5 349 73.6
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 5.3e-145 518.1 350 72.0
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.0e-144 516.2 363 69.7
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 2.0e-144 516.2 348 72.4
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.9e-144 514.6 377 68.7
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 7.7e-144 514.2 352 71.0
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.7e-143 513.1 339 72.3
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 4.2e-142 508.4 347 73.8
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.6e-141 506.5 344 70.9
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 2.1e-141 506.1 350 71.7
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 2.1e-141 506.1 405 64.0
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 2.1e-141 506.1 329 74.5
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 3.6e-141 505.4 351 70.7
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.0e-140 503.8 347 70.9
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.0e-140 503.8 345 72.2
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.0e-140 503.8 346 71.4
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-140 503.4 351 70.9
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.4e-140 503.4 351 70.9
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 3.9e-140 501.9 342 71.6
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 5.1e-140 501.5 351 70.9
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.5e-139 500.0 346 71.1
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 2.5e-139 499.2 345 70.1
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 4.3e-139 498.4 347 70.6
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 4.3e-139 498.4 347 71.8
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.2e-138 496.1 291 79.7
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 2.2e-138 496.1 349 70.5
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 6.9e-137 491.1 301 78.7
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 3.4e-136 488.8 348 69.0
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.5e-134 482.6 300 77.7
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.8e-132 476.5 346 66.8
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 3.0e-132 475.7 348 67.0
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 2.8e-130 469.2 324 69.8
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 6.3e-130 468.0 348 66.1
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 5.9e-128 461.5 347 63.4
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 2.9e-127 459.1 345 66.4
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.2e-125 453.8 347 64.6
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 9.1e-121 437.6 324 65.1
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 5.5e-118 428.3 233 83.3
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.4e-116 423.7 252 81.7
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.8e-116 423.3 244 79.5
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.8e-114 416.0 241 85.1
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.7e-114 415.6 241 85.1
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 6.3e-114 414.8 244 77.0
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.1e-113 414.1 244 76.6
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 3.7e-106 389.0 332 61.1
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 1.6e-104 383.6 324 60.5
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.7e-103 380.2 303 61.1
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.1e-102 377.5 239 76.2
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.7e-98 362.5 328 56.4
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 3.9e-95 352.4 241 72.2
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 6.6e-95 351.7 232 72.0
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.7e-88 329.7 241 68.5
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.2e-85 320.9 325 51.7
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 8.0e-85 318.2 243 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 7.6e-67 258.5 173 70.5
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.3e-66 257.7 196 66.3
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 3.5e-64 249.6 194 64.9
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.7e-63 245.0 163 69.3
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 3.6e-61 239.6 244 48.8
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 2.1e-53 213.8 199 51.3
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.2e-50 203.8 180 57.2
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.9e-47 193.0 176 58.0
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.2e-27 128.3 73 82.2
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 8.5e-26 122.1 79 72.2
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.0e-18 98.6 57 70.2
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 1.9e-09 67.8 53 62.3


User provided reference genes

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