Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 1.5e-71 273.1 179 100.0
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 2.2e-49 199.5 180 76.1
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.8e-38 162.2 188 63.3
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 4.7e-36 155.2 206 59.7
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.2e-29 132.5 207 56.0
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 7.2e-29 131.3 191 56.0
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 3.0e-27 125.9 122 52.5
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 8.8e-27 124.4 126 54.0
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 2.0e-26 123.2 217 44.2
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.3e-24 115.2 111 62.2
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.5e-23 112.1 175 50.9
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 7.7e-23 111.3 124 57.3
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 2.9e-22 109.4 127 46.5
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.9e-22 109.4 135 47.4
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.5e-21 107.1 127 44.9
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 2.1e-20 103.2 73 68.5
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.1e-20 103.2 73 68.5
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 3.6e-20 102.4 79 60.8
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 6.1e-20 101.7 130 43.8
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.0e-19 100.9 70 68.6
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.3e-19 99.8 122 42.6
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 2.3e-19 99.8 70 68.6
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 3.0e-19 99.4 129 46.5
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 4.0e-19 99.0 129 48.1
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.8e-19 98.2 73 67.1
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 8.8e-19 97.8 76 61.8
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 3.4e-18 95.9 74 64.9
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.3e-17 94.0 143 41.3
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 1.3e-17 94.0 96 55.2
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.7e-17 93.6 128 44.5
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 1.7e-17 93.6 72 66.7
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.2e-17 93.2 124 43.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.2e-17 93.2 123 43.9
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 3.7e-17 92.4 123 39.8
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.3e-17 91.7 121 40.5
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.8e-16 90.1 125 44.8
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 5.4e-16 88.6 117 47.9
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 7.0e-16 88.2 117 44.4
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 7.0e-16 88.2 117 44.4
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.2e-15 87.4 122 41.8
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.2e-15 87.4 83 55.4
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 1.2e-15 87.4 131 38.9
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.2e-15 87.4 121 43.8
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.6e-15 87.0 142 39.4
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.0e-15 86.7 130 41.5
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.0e-15 86.7 110 43.6
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 2.7e-15 86.3 117 41.0
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.7e-15 86.3 109 43.1
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 3.5e-15 85.9 127 44.9
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.9e-15 85.1 122 42.6
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 7.7e-15 84.7 67 59.7
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 7.7e-15 84.7 106 44.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.0e-14 84.3 106 43.4
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.3e-14 84.0 66 60.6
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 1.3e-14 84.0 107 44.9
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 2.2e-14 83.2 130 42.3
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 3.8e-14 82.4 134 38.8
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 5.0e-14 82.0 124 42.7
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 8.5e-14 81.3 186 45.2
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.1e-13 80.9 73 56.2
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.9e-13 80.1 84 52.4
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.5e-13 79.7 79 49.4
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 7.2e-13 78.2 182 48.4
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 7.2e-13 78.2 84 48.8
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 7.2e-13 78.2 110 40.9
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.2e-12 77.4 123 43.1
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 1.2e-12 77.4 128 39.8
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 1.6e-12 77.0 89 67.4
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-12 77.0 82 46.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 2.1e-12 76.6 79 50.6
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 2.1e-12 76.6 80 51.2
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.1e-12 76.6 126 38.9
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 3.6e-12 75.9 79 49.4
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.6e-12 75.9 68 57.4
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 4.7e-12 75.5 100 45.0
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 6.1e-12 75.1 128 39.8
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 6.1e-12 75.1 72 51.4
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.0e-11 74.3 77 50.6
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.0e-11 74.3 77 50.6
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.0e-11 74.3 110 50.9
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.0e-11 74.3 125 37.6
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 1.4e-11 73.9 85 52.9
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 3.0e-11 72.8 108 39.8
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 3.0e-11 72.8 78 46.2
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 4.0e-11 72.4 80 50.0
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 5.2e-11 72.0 73 52.1
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 5.2e-11 72.0 116 40.5
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 6.8e-11 71.6 79 45.6
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 8.8e-11 71.2 110 50.9
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.5e-10 70.5 119 45.4
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.5e-10 70.5 110 42.7
Potri.002G072000 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.4e-10 69.3 183 47.5
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 3.4e-10 69.3 133 47.4
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.4e-10 68.9 79 44.3
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 7.5e-10 68.2 79 43.0
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 9.8e-10 67.8 108 47.2
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 9.8e-10 67.8 83 45.8
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 9.8e-10 67.8 82 43.9
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.2e-09 66.6 131 36.6
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.8e-09 66.2 62 51.6
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 3.7e-09 65.9 85 41.2
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 4.9e-09 65.5 86 44.2
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 4.9e-09 65.5 86 43.0
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 4.9e-09 65.5 88 42.0
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 6.3e-09 65.1 83 45.8
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 6.3e-09 65.1 122 37.7
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 8.3e-09 64.7 86 44.2
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 8.3e-09 64.7 87 49.4
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-08 63.9 45 64.4
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 1.4e-08 63.9 58 48.3
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.8e-08 63.5 96 38.5
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 2.4e-08 63.2 62 51.6
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 3.1e-08 62.8 132 43.9
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 4.1e-08 62.4 87 43.7
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 4.1e-08 62.4 81 44.4
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.1e-08 62.4 101 39.6
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.1e-08 62.4 79 49.4
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 5.4e-08 62.0 102 40.2
SalBow6G1670 Salvia bowleyana HOM05D003899 ORTHO05D003655 7.0e-08 61.6 60 53.3
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 1.2e-07 60.8 79 44.3
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 1.2e-07 60.8 72 52.8
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.6e-07 60.5 85 41.2
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.6e-07 60.5 139 49.6
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.0e-07 60.1 71 47.9
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 2.7e-07 59.7 81 45.7
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.5e-07 59.3 65 44.6
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.5e-07 58.9 118 38.1
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.7e-07 58.2 115 34.8
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 7.7e-07 58.2 76 40.8
QL09p016294 Quercus lobata HOM05D009119 ORTHO05D003655 7.7e-07 58.2 75 45.3
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 1.0e-06 57.8 71 46.5
QL09p016276 Quercus lobata HOM05D009119 ORTHO05D003655 1.0e-06 57.8 69 46.4
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.3e-06 57.4 77 44.2
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 1.7e-06 57.0 52 55.8
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.7e-06 57.0 138 34.1
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.7e-06 57.0 70 45.7
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 2.9e-06 56.2 91 38.5
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 3.8e-06 55.8 85 38.8
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 3.8e-06 55.8 111 36.0
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 3.8e-06 55.8 90 41.1
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.0e-06 55.5 115 37.4
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 8.6e-06 54.7 108 33.3
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 8.6e-06 54.7 78 35.9
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 8.6e-06 54.7 109 36.7
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 8.6e-06 54.7 117 33.3


User provided reference genes

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