Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G139600 Theobroma cacao HOM05D006851 ORTHO05D008844 8.4e-75 283.5 132 100.0
Gohir.A12G091300 Gossypium hirsutum HOM05D006851 ORTHO05D008844 1.7e-64 249.2 137 85.4
Gohir.D12G091800 Gossypium hirsutum HOM05D006851 ORTHO05D008844 3.0e-64 248.4 137 85.4
Gorai.008G099400 Gossypium raimondii HOM05D006851 ORTHO05D008844 3.9e-64 248.1 137 84.7
COL.COLO4_33621 Corchorus olitorius HOM05D006851 ORTHO05D008844 1.1e-63 246.5 137 84.7
Nn3g21095 Nelumbo nucifera HOM05D006851 ORTHO05D008844 5.8e-60 234.2 137 80.3
Dinv00450 Davidia involucrata HOM05D006851 ORTHO05D008844 7.6e-60 233.8 137 80.3
Dinv06196 Davidia involucrata HOM05D006851 ORTHO05D008844 7.6e-60 233.8 137 80.3
Sabra10G0010500 Salix brachista HOM05D006851 ORTHO05D008844 9.9e-60 233.4 137 79.6
Sc21g0003000 Simmondsia chinensis HOM05D006851 ORTHO05D008844 9.9e-60 233.4 135 79.3
MSTRG.6776 Avicennia marina HOM05D006851 ORTHO05D008844 1.3e-59 233.0 135 80.7
Glyma.06G289700 Glycine max HOM05D006851 ORTHO05D008844 1.3e-59 233.0 133 82.0
Cpa.g.sc483.1 Carica papaya HOM05D006851 ORTHO05D008844 2.2e-59 232.3 135 83.0
Ca_18924_v3 Cicer arietinum L. HOM05D006851 ORTHO05D008844 2.9e-59 231.9 137 81.0
MD17G1263400 Malus domestica HOM05D006851 ORTHO05D008844 2.9e-59 231.9 135 81.5
Cfa014654 Carpinus fangiana HOM05D006851 ORTHO05D008844 4.9e-59 231.1 137 81.0
Lalb_Chr03g0029611 Lupinus albus HOM05D006851 ORTHO05D008844 4.9e-59 231.1 135 79.3
Thecc.01G154700 Theobroma cacao HOM05D006851 ORTHO05D008844 4.9e-59 231.1 122 91.0
Lj3g0025564 Lotus japonicus HOM05D006851 ORTHO05D008844 8.4e-59 230.3 135 80.0
Manes.02G088700 Manihot esculenta HOM05D006851 ORTHO05D008844 8.4e-59 230.3 135 82.2
CiPaw.04G128500 Carya illinoinensis HOM05D006851 ORTHO05D008844 1.9e-58 229.2 137 79.6
MD09G1234300 Malus domestica HOM05D006851 ORTHO05D008844 2.4e-58 228.8 135 80.0
TWI59G1351 Tripterygium wilfordii HOM05D006851 ORTHO05D008844 2.4e-58 228.8 134 79.9
Oeu020925.1 Olea europaea HOM05D006851 ORTHO05D008844 3.2e-58 228.4 137 76.6
Thhalv10017191m.g Eutrema salsugineum HOM05D006851 ORTHO05D008844 5.4e-58 227.6 135 77.0
AL4G41380 Arabidopsis lyrata HOM05D006851 ORTHO05D008844 7.1e-58 227.3 135 77.0
AT2G42770 Arabidopsis thaliana HOM05D006851 ORTHO05D008844 7.1e-58 227.3 135 77.0
Carub.0004s2521 Capsella rubella HOM05D006851 ORTHO05D008844 7.1e-58 227.3 135 77.0
Phvul.011G124700 Phaseolus vulgaris HOM05D006851 ORTHO05D008844 7.1e-58 227.3 135 78.5
Ciclev10016542m.g Citrus clementina HOM05D006851 ORTHO05D008844 9.3e-58 226.9 130 80.8
TAR627G1017 Trochodendron aralioides HOM05D006851 ORTHO05D008844 2.1e-57 225.7 137 77.4
TPR.G9347 Trifolium pratense HOM05D006851 ORTHO05D008844 4.6e-57 224.6 137 78.1
CSS0045809 Camellia sinensis var. sinensis HOM05D006851 ORTHO05D008844 6.0e-57 224.2 137 78.1
CANSAT64G1521 Cannabis sativa HOM05D006851 ORTHO05D008844 7.9e-57 223.8 137 77.4
Potri.010G032900 Populus trichocarpa HOM05D006851 ORTHO05D008844 7.9e-57 223.8 133 81.2
Sp4g24890 Schrenkiella parvula HOM05D006851 ORTHO05D008844 7.9e-57 223.8 134 75.4
SGA_v2.0_scaffold9G04858 Striga asiatica HOM05D006851 ORTHO05D008844 7.9e-57 223.8 137 75.9
PGR142G1684 Punica granatum HOM05D006851 ORTHO05D008844 1.3e-56 223.0 132 79.5
RcHm_v2.0_Chr2g0131101 Rosa chinensis HOM05D006851 ORTHO05D008844 1.3e-56 223.0 134 79.1
QL08p039990 Quercus lobata HOM05D006851 ORTHO05D008844 2.3e-56 222.2 136 78.7
CARHR137850 Cardamine hirsuta HOM05D006851 ORTHO05D008844 3.0e-56 221.9 135 76.3
Medtr4g078760 Medicago truncatula HOM05D006851 ORTHO05D008844 3.9e-56 221.5 137 75.9
Peaxi162Scf00469g00629 Petunia axillaris HOM05D006851 ORTHO05D008844 3.9e-56 221.5 137 73.7
Cc05_g08670 Coffea canephora HOM05D006851 ORTHO05D008844 5.1e-56 221.1 137 75.2
PSO170G1219 Papaver somniferum HOM05D006851 ORTHO05D008844 5.1e-56 221.1 137 74.5
PSO782G5210 Papaver somniferum HOM05D006851 ORTHO05D008844 5.1e-56 221.1 137 74.5
Psat7g167960 Pisum sativum HOM05D006851 ORTHO05D008844 5.1e-56 221.1 137 76.6
GSVIVG01020766001 Vitis vinifera HOM05D006851 ORTHO05D008844 5.1e-56 221.1 137 75.2
Lj1A675G56 Lonicera japonica HOM05D006851 ORTHO05D008844 6.7e-56 220.7 137 74.5
Actinidia24403 Actinidia chinensis HOM05D006851 ORTHO05D008844 8.7e-56 220.3 136 77.2
A04p32390 Brassica napus HOM05D006851 ORTHO05D008844 1.9e-55 219.2 135 73.3
BraA04t18692Z Brassica rapa HOM05D006851 ORTHO05D008844 1.9e-55 219.2 135 73.3
Aqoxy4G00244 Aquilegia oxysepala HOM05D006851 ORTHO05D008844 2.5e-55 218.8 137 72.3
Lsat_1_v5_gn_4_64780 Lactuca sativa HOM05D006851 ORTHO05D008844 2.5e-55 218.8 130 77.7
THA.LOC104803044 Tarenaya hassleriana HOM05D006851 ORTHO05D008844 2.5e-55 218.8 135 76.3
FvH4_6g27820 Fragaria vesca HOM05D006851 ORTHO05D008844 3.3e-55 218.4 135 77.0
Prupe.3G112500 Prunus persica HOM05D006851 ORTHO05D008844 3.3e-55 218.4 135 77.0
CAN.G1360.8 Capsicum annuum HOM05D006851 ORTHO05D008844 4.3e-55 218.0 137 72.3
FAN14G0067 Fragaria x ananassa HOM05D006851 ORTHO05D008844 4.3e-55 218.0 134 76.9
EL10Ac9g20993 Beta vulgaris HOM05D006851 ORTHO05D008844 5.6e-55 217.6 134 76.1
HPP92_011489 Vanilla planifolia HOM05D006851 ORTHO05D008844 5.6e-55 217.6 136 75.0
BcaC02g07219 Brassica carinata HOM05D000115 ORTHO05D005317 7.4e-55 217.2 135 72.6
C04p69910 Brassica napus HOM05D006851 ORTHO05D008844 7.4e-55 217.2 135 72.6
BolC4t28490H Brassica oleracea HOM05D006851 ORTHO05D008844 7.4e-55 217.2 135 72.6
PGSC0003DMG400017313 Solanum tuberosum HOM05D006851 ORTHO05D008844 9.6e-55 216.9 137 71.5
Solyc07g055340.3 Solanum lycopersicum HOM05D006851 ORTHO05D008844 1.3e-54 216.5 137 71.5
Sopen07g026880 Solanum pennellii HOM05D006851 ORTHO05D008844 1.3e-54 216.5 137 71.5
HanXRQChr14g0455141 Helianthus annuus HOM05D006851 ORTHO05D008844 2.8e-54 215.3 130 76.2
Sed0012320 Sechium edule HOM05D006851 ORTHO05D008844 2.8e-54 215.3 136 72.8
ECA233G5608 Erigeron canadensis HOM05D006851 ORTHO05D008844 4.8e-54 214.5 130 76.2
ClCG09G020830 Citrullus lanatus HOM05D006851 ORTHO05D008844 1.1e-53 213.4 135 73.3
Glyma.12G117300 Glycine max HOM05D006851 ORTHO05D008844 1.4e-53 213.0 122 81.1
Migut.M00236 Erythranthe guttata HOM05D006851 ORTHO05D008844 4.0e-53 211.5 136 72.8
MELO3C014448.2 Cucumis melo HOM05D006851 ORTHO05D008844 5.3e-53 211.1 135 72.6
SalBow7G2485 Salvia bowleyana HOM05D006851 ORTHO05D008844 5.3e-53 211.1 137 69.3
Zm00001eb361970 Zea mays HOM05D006851 ORTHO05D008844 5.8e-52 207.6 134 71.6
Os01g0730800 Oryza sativa ssp. japonica HOM05D006851 ORTHO05D008844 8.4e-51 203.8 130 70.0
unitig_62.g23129 Utricularia gibba HOM05D006851 ORTHO05D008844 1.2e-49 199.9 134 70.1
SEGI_02260 Sequoiadendron giganteum HOM05D006851 ORTHO05D008844 2.7e-49 198.7 129 71.3
Hma1.2p1_0178F.1_g078450 Hydrangea macrophylla HOM05D006851 ORTHO05D008844 2.5e-47 192.2 115 75.7
Aa31LG1G24530 Aethionema arabicum HOM05D006851 ORTHO05D008844 3.3e-47 191.8 171 56.1
COL.COLO4_34178 Corchorus olitorius HOM05D006851 ORTHO05D008844 9.6e-47 190.3 112 79.5
SEGI_39598 Sequoiadendron giganteum HOM05D006851 ORTHO05D008844 4.8e-46 188.0 129 64.3
VMungo1127G1292 Vigna mungo HOM05D006851 ORTHO05D008844 6.9e-45 184.1 110 76.4
Duzib187G0166 Durio zibethinus HOM05D006851 ORTHO05D008844 2.0e-44 182.6 105 81.0
SMO351G0432 Selaginella moellendorffii HOM05D006851 ORTHO05D008844 2.5e-42 175.6 130 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5720 Anthoceros agrestis HOM05D006851 ORTHO05D008844 3.2e-42 175.3 131 64.9
Atru.chr6.2752 Acer truncatum HOM05D006851 ORTHO05D008844 7.1e-42 174.1 105 73.3
FAN09G4077 Fragaria x ananassa HOM05D006851 ORTHO05D008844 4.6e-41 171.4 108 72.2
Pp3c20_12770 Physcomitrium patens HOM05D006851 ORTHO05D008844 3.0e-40 168.7 128 63.3
ATR0012G031 Amborella trichopoda HOM05D006851 ORTHO05D008844 6.7e-40 167.5 105 71.4
CsaV3_6G037870 Cucumis sativus L. HOM05D006851 ORTHO05D008844 2.5e-39 165.6 106 69.8
Eucgr.K01171 Eucalyptus grandis HOM05D006851 ORTHO05D008844 2.5e-39 165.6 102 76.5
arahy.Tifrunner.gnm1.ann1.WV2S1U Arachis hypogaea HOM05D006851 ORTHO05D008844 1.3e-38 163.3 99 73.7
Nitab4.5_0000249g0050 Nicotiana tabacum HOM05D006851 ORTHO05D008844 2.2e-38 162.5 103 68.9
Nitab4.5_0005922g0060 Nicotiana tabacum HOM05D006851 ORTHO05D008844 1.4e-37 159.8 103 68.0
Haze_13231 Corylus avellana HOM05D006851 ORTHO05D008844 2.4e-37 159.1 95 77.9
Mapoly0112s0035 Marchantia polymorpha HOM05D006851 ORTHO05D008844 4.1e-37 158.3 129 57.4
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 4.1e-37 158.3 108 69.4
Ca_29529_v3 Cicer arietinum L. HOM05D006851 ORTHO05D008844 7.6e-36 154.1 95 75.8
CBR_g30010 Chara braunii HOM05D006851 ORTHO05D008844 1.0e-35 153.7 129 55.0
FAN02G4364 Fragaria x ananassa HOM05D006851 ORTHO05D008844 4.2e-34 148.3 95 71.6
AUR62024041 Chenopodium quinoa HOM05D006851 ORTHO05D008844 6.1e-33 144.4 95 69.5
MCO06G111 Micromonas commoda HOM05D006851 ORTHO05D008844 2.8e-22 109.0 135 40.0
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 1.8e-21 106.3 82 61.0
Thecc.01G154300 Theobroma cacao HOM05D006851 ORTHO05D008844 2.4e-21 105.9 50 92.0
Cre16.g683750 Chlamydomonas reinhardtii HOM05D006851 ORTHO05D008844 3.8e-19 98.6 124 37.9
CBR_g29303 Chara braunii HOM05D001633 ORTHO05D002880 4.8e-14 81.6 124 33.9
Hma1.2p1_0178F.1_g078440 Hydrangea macrophylla HOM05D006851 ORTHO05D008844 8.2e-14 80.9 46 71.7
COL.COLO4_16158 Corchorus olitorius HOM05D006851 ORTHO05D008844 5.3e-13 78.2 62 58.1
Actinidia08254 Actinidia chinensis HOM05D001633 ORTHO05D002880 8.5e-11 70.9 124 29.0
vmacro22068 Vaccinium macrocarpon HOM05D001633 ORTHO05D002880 1.5e-10 70.1 128 30.5
Lalb_Chr21g0308161 Lupinus albus HOM05D001633 ORTHO05D002880 5.5e-10 68.2 124 26.6
CARHR180800 Cardamine hirsuta HOM05D001633 ORTHO05D002880 7.2e-10 67.8 124 29.0
MSTRG.5330 Avicennia marina HOM05D001633 ORTHO05D002880 1.6e-09 66.6 125 28.8
Lj4C69T4 Lonicera japonica HOM05D001633 ORTHO05D002880 1.6e-09 66.6 124 29.8
Zm00001eb264730 Zea mays HOM05D001633 ORTHO05D002880 2.7e-09 65.9 124 26.6
vmacro22794 Vaccinium macrocarpon HOM05D001633 ORTHO05D002880 3.6e-09 65.5 128 29.7
ATR0030G007 Amborella trichopoda HOM05D001633 ORTHO05D002880 4.7e-09 65.1 124 29.0
Aqoxy6G02722 Aquilegia oxysepala HOM05D001633 ORTHO05D002880 1.4e-08 63.5 125 28.0
Lalb_Chr06g0165261 Lupinus albus HOM05D001633 ORTHO05D002880 1.8e-08 63.2 124 25.8
MCO14G341 Micromonas commoda HOM05D002936 ORTHO05D002880 1.8e-08 63.2 128 32.0
COL.COLO4_28528 Corchorus olitorius HOM05D001633 ORTHO05D002880 2.3e-08 62.8 132 27.3
ClCG08G016380 Citrullus lanatus HOM05D001633 ORTHO05D002880 3.0e-08 62.4 124 28.2
HPP92_020458 Vanilla planifolia HOM05D001633 ORTHO05D002880 3.0e-08 62.4 124 25.8
HPP92_026176 Vanilla planifolia HOM05D001633 ORTHO05D002880 3.0e-08 62.4 124 25.8
CsaV3_2G026230 Cucumis sativus L. HOM05D001633 ORTHO05D002880 4.0e-08 62.0 124 27.4
CiPaw.05G015600 Carya illinoinensis HOM05D001633 ORTHO05D002880 5.2e-08 61.6 124 25.0
MELO3C010815.2 Cucumis melo HOM05D001633 ORTHO05D002880 5.2e-08 61.6 124 27.4
QL11p031864 Quercus lobata HOM05D001633 ORTHO05D002880 6.7e-08 61.2 114 26.3
CANSAT25G0864 Cannabis sativa HOM05D001633 ORTHO05D002880 8.8e-08 60.8 125 24.0
CiPaw.06G167300 Carya illinoinensis HOM05D001633 ORTHO05D002880 8.8e-08 60.8 124 25.0
GSVIVG01037862001 Vitis vinifera HOM05D001633 ORTHO05D002880 8.8e-08 60.8 125 26.4
Sc18g0003660 Simmondsia chinensis HOM05D001633 ORTHO05D002880 2.6e-07 59.3 111 29.7
Lj5g0021743 Lotus japonicus HOM05D001633 ORTHO05D002880 3.3e-07 58.9 124 22.6
arahy.Tifrunner.gnm1.ann1.PDFB0Z Arachis hypogaea HOM05D001633 ORTHO05D002880 4.4e-07 58.5 125 24.8
arahy.Tifrunner.gnm1.ann1.MX1GHC Arachis hypogaea HOM05D001633 ORTHO05D002880 7.5e-07 57.8 125 24.0
Dinv15792 Davidia involucrata HOM05D001633 ORTHO05D002880 7.5e-07 57.8 125 24.8
Oeu010417.1 Olea europaea HOM05D001633 ORTHO05D002880 7.5e-07 57.8 125 22.4
Pp3c8_1860 Physcomitrium patens HOM05D001633 ORTHO05D006978 7.5e-07 57.8 128 27.3
CSS0034661 Camellia sinensis var. sinensis HOM05D001633 ORTHO05D002880 1.3e-06 57.0 125 23.2
DCAR_021963 Daucus carota HOM05D001633 ORTHO05D002880 1.3e-06 57.0 125 24.0
CSS0035445 Camellia sinensis var. sinensis HOM05D001633 ORTHO05D002880 1.7e-06 56.6 125 23.2
Gohir.A05G023800 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.7e-06 56.6 130 26.2
Cre12.g550600 Chlamydomonas reinhardtii HOM05D003013 ORTHO05D003460 2.2e-06 56.2 128 28.1
Duzib052G0877 Durio zibethinus HOM05D001633 ORTHO05D002880 2.2e-06 56.2 125 23.2
Aqoxy4G00837 Aquilegia oxysepala HOM05D001633 ORTHO05D006978 2.8e-06 55.8 123 28.5
Medtr1g106775 Medicago truncatula HOM05D001633 ORTHO05D002880 3.7e-06 55.5 124 22.6
Psat6g215720 Pisum sativum HOM05D001633 ORTHO05D002880 3.7e-06 55.5 125 22.4
Hund11912 Selenicereus undatus HOM05D003013 ORTHO05D003460 3.7e-06 55.5 132 28.8
SEGI_15989 Sequoiadendron giganteum HOM05D001633 ORTHO05D006978 3.7e-06 55.5 131 28.2
DCAR_014752 Daucus carota HOM05D001633 ORTHO05D006978 4.8e-06 55.1 123 30.1
Zm00001eb138000 Zea mays HOM05D001633 ORTHO05D002880 4.8e-06 55.1 121 28.1
Mapoly0001s0503 Marchantia polymorpha HOM05D001633 ORTHO05D006978 6.3e-06 54.7 123 26.8


User provided reference genes

Program Settings