Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G136400 Theobroma cacao HOM05D000584 ORTHO05D000458 5.4e-60 234.2 123 100.0
Thecc.04G276400 Theobroma cacao HOM05D000584 ORTHO05D000458 3.3e-25 118.6 65 95.4
Gorai.011G185500 Gossypium raimondii HOM05D000584 ORTHO05D000458 4.5e-22 108.2 90 66.7
Gohir.D10G166200 Gossypium hirsutum HOM05D000584 ORTHO05D000458 7.6e-22 107.5 90 67.8
COL.COLO4_13936 Corchorus olitorius HOM05D000584 ORTHO05D000458 1.9e-20 102.8 88 68.2
Duzib151G0992 Durio zibethinus HOM05D000584 ORTHO05D000458 2.5e-20 102.4 63 84.1
Prupe.1G142800 Prunus persica HOM05D000584 ORTHO05D000458 2.7e-19 99.0 78 65.4
Gohir.A10G101715 Gossypium hirsutum HOM05D000584 ORTHO05D000458 3.6e-19 98.6 80 67.5
Haze_01052 Corylus avellana HOM05D000584 ORTHO05D000458 1.0e-18 97.1 87 62.1
FAN07G2899 Fragaria x ananassa HOM05D000584 ORTHO05D000458 1.4e-18 96.7 87 59.8
FAN17G2906 Fragaria x ananassa HOM05D000584 ORTHO05D000458 1.4e-18 96.7 87 59.8
Lj4g0000605 Lotus japonicus HOM05D000584 ORTHO05D000458 2.3e-18 95.9 87 56.3
Atru.chr4.2747 Acer truncatum HOM05D000584 ORTHO05D000458 3.9e-18 95.1 72 68.1
Eucgr.H03764 Eucalyptus grandis HOM05D000584 ORTHO05D000458 8.8e-18 94.0 85 58.8
Lalb_Chr07g0177561 Lupinus albus HOM05D000584 ORTHO05D000458 8.8e-18 94.0 87 55.2
FAN12G0086 Fragaria x ananassa HOM05D000584 ORTHO05D000458 1.5e-17 93.2 87 57.5
FAN12G2416 Fragaria x ananassa HOM05D000584 ORTHO05D000458 1.5e-17 93.2 87 57.5
PGR015G0001 Punica granatum HOM05D000584 ORTHO05D000458 2.5e-17 92.4 83 60.2
PGR104G0001 Punica granatum HOM05D000584 ORTHO05D000458 2.5e-17 92.4 83 60.2
Glyma.17G022400 Glycine max HOM05D000584 ORTHO05D000458 4.3e-17 91.7 87 58.6
FvH4_4g17100 Fragaria vesca HOM05D000584 ORTHO05D000458 5.7e-17 91.3 87 56.3
MD16G1175900 Malus domestica HOM05D000584 ORTHO05D000458 9.7e-17 90.5 81 60.5
Phvul.003G100500 Phaseolus vulgaris HOM05D000584 ORTHO05D000458 2.2e-16 89.4 87 57.5
Glyma.15G098400 Glycine max HOM05D000584 ORTHO05D000458 2.8e-16 89.0 80 57.5
Rhsim07G0176500 Rhododendron simsii HOM05D000584 ORTHO05D000458 3.7e-16 88.6 86 55.8
Phvul.006G160900 Phaseolus vulgaris HOM05D000584 ORTHO05D000458 4.8e-16 88.2 80 53.8
CsaV3_3G014090 Cucumis sativus L. HOM05D000584 ORTHO05D000458 6.3e-16 87.8 88 56.8
MD13G1174400 Malus domestica HOM05D000584 ORTHO05D000458 6.3e-16 87.8 81 60.5
MELO3C006603.2 Cucumis melo HOM05D000584 ORTHO05D000458 1.1e-15 87.0 88 56.8
TWI36G1661 Tripterygium wilfordii HOM05D000584 ORTHO05D000458 3.1e-15 85.5 86 52.3
CiPaw.01G153700 Carya illinoinensis HOM05D000584 ORTHO05D000458 5.3e-15 84.7 113 46.9
Dinv44431 Davidia involucrata HOM05D000584 ORTHO05D000458 5.3e-15 84.7 80 56.2
Lalb_Chr13g0303881 Lupinus albus HOM05D000584 ORTHO05D000458 5.3e-15 84.7 87 52.9
VMungo1215G2573 Vigna mungo HOM05D000584 ORTHO05D000458 5.3e-15 84.7 84 58.3
TPR.G14948 Trifolium pratense HOM05D000584 ORTHO05D000458 1.2e-14 83.6 87 51.7
TWI56G1204 Tripterygium wilfordii HOM05D000584 ORTHO05D000458 1.2e-14 83.6 86 50.0
Atru.chr2.633 Acer truncatum HOM05D000584 ORTHO05D000458 1.5e-14 83.2 82 52.4
arahy.Tifrunner.gnm1.ann1.J5XN66 Arachis hypogaea HOM05D000584 ORTHO05D000458 1.5e-14 83.2 87 48.3
GSVIVG01017816001 Vitis vinifera HOM05D000584 ORTHO05D000458 1.5e-14 83.2 78 55.1
Actinidia30907 Actinidia chinensis HOM05D000584 ORTHO05D000458 3.4e-14 82.0 85 51.8
Gohir.A11G237600 Gossypium hirsutum HOM05D000584 ORTHO05D000458 4.5e-14 81.6 83 53.0
Gohir.D11G248100 Gossypium hirsutum HOM05D000584 ORTHO05D000458 4.5e-14 81.6 83 53.0
Hma1.2p1_0823F.1_g224570 Hydrangea macrophylla HOM05D000584 ORTHO05D000458 4.5e-14 81.6 86 50.0
arahy.Tifrunner.gnm1.ann1.E46NXI Arachis hypogaea HOM05D000584 ORTHO05D000458 5.9e-14 81.3 87 48.3
Gohir.D13G169200 Gossypium hirsutum HOM05D000584 ORTHO05D000458 7.7e-14 80.9 83 49.4
Gorai.013G192700 Gossypium raimondii HOM05D000584 ORTHO05D000458 7.7e-14 80.9 83 49.4
Sed0021310 Sechium edule HOM05D000584 ORTHO05D000458 7.7e-14 80.9 87 54.0
Sed0005759 Sechium edule HOM05D000584 ORTHO05D000458 1.0e-13 80.5 80 53.8
Medtr4g118760 Medicago truncatula HOM05D000584 ORTHO05D000458 2.2e-13 79.3 99 47.5
TAR633G1254 Trochodendron aralioides HOM05D000584 ORTHO05D000458 2.2e-13 79.3 76 53.9
vmacro15266 Vaccinium macrocarpon HOM05D000584 ORTHO05D000458 2.2e-13 79.3 85 49.4
MSTRG.10049 Avicennia marina HOM05D000584 ORTHO05D000458 2.9e-13 79.0 83 55.4
Ca_21551_v3 Cicer arietinum L. HOM05D000584 ORTHO05D000458 3.8e-13 78.6 87 49.4
Cc02_g32240 Coffea canephora HOM05D000584 ORTHO05D000458 3.8e-13 78.6 83 49.4
GSVIVG01021970001 Vitis vinifera HOM05D000584 ORTHO05D000458 8.5e-13 77.4 86 47.7
MBI18_g08812_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.4e-12 76.6 76 52.6
Rhsim02G0014000 Rhododendron simsii HOM05D000584 ORTHO05D000458 1.4e-12 76.6 84 57.1
CANSAT78G1702 Cannabis sativa HOM05D000584 ORTHO05D000458 2.5e-12 75.9 72 52.8
Gohir.A13G166300 Gossypium hirsutum HOM05D000584 ORTHO05D000458 2.5e-12 75.9 83 48.2
RcHm_v2.0_Chr4g0420891 Rosa chinensis HOM05D000584 ORTHO05D000458 2.5e-12 75.9 87 48.3
Thecc.05G254100 Theobroma cacao HOM05D000584 ORTHO05D000458 2.5e-12 75.9 82 48.8
Glyma.07G252000 Glycine max HOM05D000584 ORTHO05D000458 5.5e-12 74.7 87 51.7
CSS0018994 Camellia sinensis var. sinensis HOM05D000584 ORTHO05D000458 9.4e-12 73.9 83 49.4
Lj9A675T38 Lonicera japonica HOM05D000584 ORTHO05D000458 1.2e-11 73.6 88 47.7
Prupe.6G335400 Prunus persica HOM05D000584 ORTHO05D000458 1.2e-11 73.6 87 48.3
DCAR_003292 Daucus carota HOM05D000584 ORTHO05D000458 1.6e-11 73.2 86 45.3
Manes.08G125700 Manihot esculenta HOM05D000584 ORTHO05D000458 1.6e-11 73.2 86 44.2
Sp1g07460 Schrenkiella parvula HOM05D000584 ORTHO05D000458 2.1e-11 72.8 83 45.8
BolC8t48872H Brassica oleracea HOM05D000584 ORTHO05D000458 2.7e-11 72.4 83 44.6
BraA08t35405Z Brassica rapa HOM05D000584 ORTHO05D000458 2.7e-11 72.4 83 44.6
Thhalv10007714m.g Eutrema salsugineum HOM05D000584 ORTHO05D000458 2.7e-11 72.4 83 45.8
PSO210G2116 Papaver somniferum HOM05D000584 ORTHO05D000458 2.7e-11 72.4 86 43.0
CSS0008589 Camellia sinensis var. sinensis HOM05D000584 ORTHO05D000458 3.6e-11 72.0 83 53.0
SGA_v2.0_scaffold57G20257 Striga asiatica HOM05D000584 ORTHO05D000458 3.6e-11 72.0 81 51.9
MBI19_g04669_MAGBIO Magnolia biondii HOM05D000584 ORTHO05D000458 4.7e-11 71.6 77 48.1
A08p34940 Brassica napus HOM05D000584 ORTHO05D000458 6.1e-11 71.2 85 43.5
CiPaw.07G011300 Carya illinoinensis HOM05D000584 ORTHO05D000458 6.1e-11 71.2 80 51.2
C05p06910 Brassica napus HOM05D000584 ORTHO05D000458 1.0e-10 70.5 83 45.8
BolC5t29448H Brassica oleracea HOM05D000584 ORTHO05D000458 1.0e-10 70.5 83 45.8
BraA06t23782Z Brassica rapa HOM05D000584 ORTHO05D000458 1.0e-10 70.5 83 45.8
Migut.G00216 Erythranthe guttata HOM05D000584 ORTHO05D000458 1.0e-10 70.5 83 53.0
THA.LOC104808032 Tarenaya hassleriana HOM05D000584 ORTHO05D000458 1.4e-10 70.1 86 43.0
C08p12310 Brassica napus HOM05D000584 ORTHO05D000458 1.8e-10 69.7 85 42.4
Potri.013G031400 Populus trichocarpa HOM05D000584 ORTHO05D000458 3.0e-10 68.9 86 44.2
A06p05720 Brassica napus HOM05D000584 ORTHO05D000458 3.9e-10 68.6 83 44.6
Nitab4.5_0000245g0120 Nicotiana tabacum HOM05D000584 ORTHO05D000458 3.9e-10 68.6 86 44.2
EL10Ac1g00577 Beta vulgaris HOM05D000584 ORTHO05D000458 5.1e-10 68.2 80 46.2
Cc03_g02420 Coffea canephora HOM05D000584 ORTHO05D000458 5.1e-10 68.2 86 47.7
ECA246G0550 Erigeron canadensis HOM05D000584 ORTHO05D000458 5.1e-10 68.2 86 47.7
Peaxi162Scf00225g00522 Petunia axillaris HOM05D000584 ORTHO05D000458 5.1e-10 68.2 86 44.2
Actinidia19820 Actinidia chinensis HOM05D000584 ORTHO05D000458 6.7e-10 67.8 87 42.5
QL03p000984 Quercus lobata HOM05D000584 ORTHO05D000458 6.7e-10 67.8 80 46.2
THA.LOC104823742 Tarenaya hassleriana HOM05D000584 ORTHO05D000458 6.7e-10 67.8 88 42.0
Peaxi162Scf00386g00110 Petunia axillaris HOM05D000584 ORTHO05D000458 8.8e-10 67.4 77 48.1
BcaC07g41926 Brassica carinata HOM05D000584 ORTHO05D000458 1.5e-09 66.6 83 42.2
Sabra05G0041600 Salix brachista HOM05D000584 ORTHO05D000458 1.5e-09 66.6 84 40.5
BcaC07g41925 Brassica carinata HOM05D000584 ORTHO05D000458 2.0e-09 66.2 83 43.4
A09p65760 Brassica napus HOM05D000584 ORTHO05D000458 2.0e-09 66.2 83 43.4
C08p49830 Brassica napus HOM05D000584 ORTHO05D000458 2.0e-09 66.2 83 43.4
BolC8t52510H Brassica oleracea HOM05D000584 ORTHO05D000458 2.0e-09 66.2 83 43.4
BraA09t41919Z Brassica rapa HOM05D000584 ORTHO05D000458 2.0e-09 66.2 83 43.4
HanXRQChr12g0379611 Helianthus annuus HOM05D000584 ORTHO05D000458 2.0e-09 66.2 83 47.0
THA.LOC104805836 Tarenaya hassleriana HOM05D000584 ORTHO05D000458 2.0e-09 66.2 86 43.0
Manes.09G160000 Manihot esculenta HOM05D000584 ORTHO05D000458 2.6e-09 65.9 86 40.7
Nn4g26040 Nelumbo nucifera HOM05D000584 ORTHO05D000458 2.6e-09 65.9 82 46.3
PSO170G4558 Papaver somniferum HOM05D000584 ORTHO05D000458 2.6e-09 65.9 73 43.8
Sc13g0003640 Simmondsia chinensis HOM05D000584 ORTHO05D000458 2.6e-09 65.9 87 42.5
BcaC05g24741 Brassica carinata HOM05D000584 ORTHO05D000458 3.3e-09 65.5 83 43.4
Solyc01g067720.4 Solanum lycopersicum HOM05D000584 ORTHO05D000458 3.3e-09 65.5 83 47.0
Sopen01g029650 Solanum pennellii HOM05D000584 ORTHO05D000458 3.3e-09 65.5 83 47.0
PGSC0003DMG400010653 Solanum tuberosum HOM05D000584 ORTHO05D000458 3.3e-09 65.5 83 49.4
MD12G1230200 Malus domestica HOM05D000584 ORTHO05D000458 5.7e-09 64.7 84 45.2
Sc16g0008220 Simmondsia chinensis HOM05D000584 ORTHO05D000458 7.4e-09 64.3 77 41.6
PGR004G0065 Punica granatum HOM05D000584 ORTHO05D000458 9.7e-09 63.9 79 45.6
TAR362G0727 Trochodendron aralioides HOM05D000584 ORTHO05D000458 2.2e-08 62.8 75 46.7
CARHR008740 Cardamine hirsuta HOM05D000584 ORTHO05D000458 2.8e-08 62.4 69 44.9
Lalb_Chr06g0167881 Lupinus albus HOM05D000584 ORTHO05D015987 2.8e-08 62.4 83 45.8
Os01g0936800 Oryza sativa ssp. japonica HOM05D000584 ORTHO05D000458 3.7e-08 62.0 82 42.7
Os05g0373000 Oryza sativa ssp. japonica HOM05D000584 ORTHO05D000458 3.7e-08 62.0 82 42.7
CAN.G223.6 Capsicum annuum HOM05D000584 ORTHO05D000458 4.8e-08 61.6 84 45.2
Prupe.6G335500 Prunus persica HOM05D000584 ORTHO05D000458 4.8e-08 61.6 64 53.1
TPR.G2712 Trifolium pratense HOM05D000584 ORTHO05D015987 6.3e-08 61.2 86 45.3
Nitab4.5_0003067g0050 Nicotiana tabacum HOM05D000584 ORTHO05D000458 8.2e-08 60.8 73 49.3
Sed0000617 Sechium edule HOM05D000584 ORTHO05D000458 1.4e-07 60.1 86 43.0
PGSC0003DMG402022455 Solanum tuberosum HOM05D000584 ORTHO05D000458 1.4e-07 60.1 80 41.2
CAN.G134.211 Capsicum annuum HOM05D000584 ORTHO05D000458 1.8e-07 59.7 86 39.5
Aqoxy2G03125 Aquilegia oxysepala HOM05D000584 ORTHO05D000458 3.1e-07 58.9 69 43.5
CSS0006707 Camellia sinensis var. sinensis HOM05D000584 ORTHO05D000458 3.1e-07 58.9 76 43.4
Glyma.13G214700 Glycine max HOM05D000584 ORTHO05D000458 4.1e-07 58.5 59 57.6
Psat6g148240 Pisum sativum HOM05D000584 ORTHO05D015987 4.1e-07 58.5 86 44.2
Potri.005G044900 Populus trichocarpa HOM05D000584 ORTHO05D000458 4.1e-07 58.5 87 35.6
AL1G19250 Arabidopsis lyrata HOM05D000584 ORTHO05D000458 5.3e-07 58.2 83 42.2
Manes.15G017600 Manihot esculenta HOM05D000584 ORTHO05D000458 5.3e-07 58.2 57 61.4
Actinidia05747 Actinidia chinensis HOM05D000584 ORTHO05D000458 7.0e-07 57.8 74 41.9
AUR62000933 Chenopodium quinoa HOM05D000584 ORTHO05D000458 7.0e-07 57.8 81 40.7
Glyma.20G230200 Glycine max HOM05D000584 ORTHO05D015987 7.0e-07 57.8 86 44.2
Medtr1g081950 Medicago truncatula HOM05D000584 ORTHO05D015987 7.0e-07 57.8 86 44.2
AUR62005036 Chenopodium quinoa HOM05D000584 ORTHO05D000458 9.1e-07 57.4 81 40.7
Lsat_1_v5_gn_5_37741 Lactuca sativa HOM05D000584 ORTHO05D000458 9.1e-07 57.4 84 45.2
Lalb_Chr02g0148521 Lupinus albus HOM05D000584 ORTHO05D015987 1.2e-06 57.0 83 41.0
CANSAT54G2586 Cannabis sativa HOM05D000584 ORTHO05D000458 1.5e-06 56.6 78 43.6
Nitab4.5_0000700g0030 Nicotiana tabacum HOM05D000584 ORTHO05D000458 1.5e-06 56.6 71 46.5
Ciclev10001215m.g Citrus clementina HOM05D000584 ORTHO05D000458 2.6e-06 55.8 51 52.9
Phvul.007G183900 Phaseolus vulgaris HOM05D000584 ORTHO05D015987 2.6e-06 55.8 78 44.9
arahy.Tifrunner.gnm1.ann1.QXR65D Arachis hypogaea HOM05D000584 ORTHO05D000458 3.4e-06 55.5 87 36.8
arahy.Tifrunner.gnm1.ann1.U5NVVR Arachis hypogaea HOM05D000584 ORTHO05D000458 3.4e-06 55.5 87 36.8
Nitab4.5_0011984g0030 Nicotiana tabacum HOM05D000584 ORTHO05D000458 4.5e-06 55.1 78 41.0
Lj5g0025674 Lotus japonicus HOM05D000584 ORTHO05D015987 5.9e-06 54.7 75 45.3
Gorai.007G264400 Gossypium raimondii HOM05D000584 ORTHO05D000458 7.7e-06 54.3 83 39.8


User provided reference genes

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