Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 4.5e-148 528.1 302 100.0
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 6.1e-113 411.4 308 79.9
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 7.4e-111 404.4 312 81.1
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.9e-106 389.8 311 76.8
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 2.9e-99 365.9 321 77.9
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 6.5e-99 364.8 321 74.8
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 6.1e-97 358.2 322 72.0
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 6.1e-97 358.2 322 72.0
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 1.8e-80 303.5 313 61.0
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 3.2e-77 292.7 315 67.0
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 2.1e-73 280.0 304 62.8
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.5e-71 273.9 305 61.0
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.9e-69 266.9 314 58.0
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.3e-67 260.8 308 59.4
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 2.3e-67 260.0 313 58.5
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.3e-66 256.1 321 55.5
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 4.7e-65 252.3 308 54.9
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 2.6e-63 246.5 322 55.9
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 2.1e-60 236.9 328 59.1
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 1.2e-57 227.6 308 59.4
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 8.9e-56 221.5 303 55.4
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 2.4e-53 213.4 306 51.3
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 5.1e-51 205.7 318 53.5
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 5.2e-48 195.7 328 51.5
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 2.0e-47 193.7 341 48.1
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 9.9e-47 191.4 312 50.3
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 9.3e-45 184.9 330 50.3
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 7.8e-44 181.8 310 43.5
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 1.0e-43 181.4 326 46.9
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 3.9e-43 179.5 327 48.3
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 6.6e-43 178.7 326 46.3
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.5e-42 177.6 327 48.3
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 2.5e-42 176.8 330 50.9
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.6e-41 174.1 311 50.5
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 3.1e-40 169.9 327 48.9
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 2.0e-39 167.2 327 46.2
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 2.9e-38 163.3 337 43.6
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 2.9e-38 163.3 334 47.0
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 1.1e-37 161.4 326 39.0
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 9.6e-34 148.3 322 46.3
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 8.1e-33 145.2 330 44.8
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 8.1e-33 145.2 318 47.8
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 1.1e-32 144.8 311 46.0
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 4.0e-32 142.9 314 46.5
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 1.5e-31 141.0 317 44.8
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.6e-31 140.2 227 44.9
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 4.9e-30 136.0 333 46.5
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.1e-29 134.8 376 35.9
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 1.4e-29 134.4 349 40.4
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.9e-29 134.0 306 40.5
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 2.1e-28 130.6 322 46.0
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 1.0e-27 128.3 319 37.9
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 1.8e-27 127.5 230 44.8
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 3.0e-27 126.7 323 45.5
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 5.1e-27 125.9 347 40.6
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 2.8e-25 120.2 341 35.2
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 3.7e-25 119.8 348 35.9
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 2.0e-23 114.0 341 40.2
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 4.5e-23 112.8 209 39.7
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 3.8e-22 109.8 345 37.1
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 4.9e-22 109.4 349 39.5
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 6.5e-22 109.0 326 36.5
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 1.4e-21 107.8 351 34.5
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 1.9e-21 107.5 318 33.6
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 2.5e-21 107.1 346 41.6
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 5.5e-21 105.9 357 37.0
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 2.7e-20 103.6 344 34.3
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 7.9e-20 102.1 344 34.0
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 1.0e-19 101.7 327 39.8
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.8e-19 100.9 158 46.2
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 5.1e-19 99.4 340 32.6
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.9e-18 97.4 159 44.7
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 2.5e-18 97.1 357 36.7
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 7.4e-18 95.5 349 38.7
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 1.3e-17 94.7 165 46.1
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 2.1e-17 94.0 329 38.9
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 3.7e-17 93.2 315 37.5
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 2.4e-16 90.5 348 34.8
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 3.1e-16 90.1 319 39.5
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 4.1e-16 89.7 348 34.5
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 4.1e-16 89.7 348 34.5
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 2.2e-14 84.0 183 47.0
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 1.2e-12 78.2 335 37.3
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.1e-10 71.6 191 38.7
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 1.9e-10 70.9 341 29.3
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 4.3e-10 69.7 202 36.6
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 7.4e-10 68.9 207 44.0
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 2.2e-09 67.4 202 33.2
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 3.7e-09 66.6 405 27.2


User provided reference genes

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