Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 6.2e-24 113.2 55 100.0
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 3.1e-23 110.9 55 96.4
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 3.1e-23 110.9 55 96.4
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 3.1e-23 110.9 55 96.4
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 9.0e-23 109.4 55 94.5
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 9.0e-23 109.4 55 94.5
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 1.2e-22 109.0 55 90.9
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 2.6e-22 107.8 55 92.7
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 3.4e-22 107.5 55 92.7
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 3.4e-22 107.5 55 94.5
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 5.8e-22 106.7 55 92.7
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 5.8e-22 106.7 55 92.7
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 7.6e-22 106.3 55 89.1
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 7.6e-22 106.3 55 89.1
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 2.2e-21 104.8 55 87.3
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 1.4e-20 102.1 55 83.6
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.9e-20 101.7 55 85.5
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 1.9e-20 101.7 55 83.6
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 2.5e-20 101.3 55 85.5
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 2.5e-20 101.3 55 85.5
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 2.5e-20 101.3 55 85.5
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 4.2e-20 100.5 55 85.5
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 1.2e-19 99.0 55 85.5
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 1.2e-19 99.0 55 85.5
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 1.2e-19 99.0 55 85.5
TWI31G0092 Tripterygium wilfordii HOM05D007602 ORTHO05D009086 1.6e-19 98.6 55 85.5
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 2.1e-19 98.2 55 81.8
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 2.1e-19 98.2 55 83.6
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 2.1e-19 98.2 55 81.8
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 83.6
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 81.8
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 4.6e-19 97.1 55 80.0
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 4.6e-19 97.1 55 81.8
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 4.6e-19 97.1 54 81.5
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 4.6e-19 97.1 55 80.0
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 6.0e-19 96.7 55 81.8
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 6.0e-19 96.7 55 76.4
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 1.0e-18 95.9 53 81.1
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 1.8e-18 95.1 55 80.0
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 2.3e-18 94.7 55 78.2
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 2.3e-18 94.7 55 76.4
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 5.1e-18 93.6 55 78.2
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 6.7e-18 93.2 55 80.0
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 6.7e-18 93.2 53 77.4
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 1.1e-17 92.4 53 79.2
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 1.1e-17 92.4 55 81.8
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 1.9e-17 91.7 55 76.4
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 1.9e-17 91.7 55 76.4
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 3.3e-17 90.9 55 74.5
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 3.3e-17 90.9 55 74.5
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 76.4
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 5.7e-17 90.1 54 74.1
VMungo1127G0479 Vigna mungo HOM05D007602 ORTHO05D009086 7.4e-17 89.7 51 82.4
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 9.6e-17 89.4 55 74.5
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 1.3e-16 89.0 55 70.9
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 1.3e-16 89.0 55 72.7
Nn6g32178 Nelumbo nucifera HOM05D007602 ORTHO05D009086 1.3e-16 89.0 55 78.2
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 1.3e-16 89.0 55 70.9
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 1.6e-16 88.6 55 69.1
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 2.1e-16 88.2 55 74.5
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 2.1e-16 88.2 55 74.5
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 6.2e-16 86.7 52 75.0
Nn5g29445 Nelumbo nucifera HOM05D007602 ORTHO05D009086 1.1e-15 85.9 55 72.7
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 1.4e-15 85.5 55 69.1
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 1.4e-15 85.5 55 67.3
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 65.5
RcHm_v2.0_Chr6g0262021 Rosa chinensis HOM05D007602 ORTHO05D009086 1.8e-15 85.1 52 73.1
A08p03960 Brassica napus HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 69.1
Aa31LG10G4570 Aethionema arabicum HOM05D007602 ORTHO05D009086 4.0e-15 84.0 56 71.4
Glyma.16G059100 Glycine max HOM05D007602 ORTHO05D009086 5.3e-15 83.6 51 76.5
TAR381G0702 Trochodendron aralioides HOM05D007602 ORTHO05D009086 5.3e-15 83.6 55 70.9
ECA240G4508 Erigeron canadensis HOM05D007602 ORTHO05D009086 1.2e-14 82.4 52 71.2
MD10G1085000 Malus domestica HOM05D007602 ORTHO05D009086 2.0e-14 81.6 55 70.9
Atru.chr12.1346 Acer truncatum HOM05D007602 ORTHO05D009086 3.8e-13 77.4 48 66.7
MD00G1073700 Malus domestica HOM05D007602 ORTHO05D009086 3.8e-13 77.4 55 69.1
Sopen10g022680 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-12 74.3 47 74.5
DCAR_022083 Daucus carota HOM05D007602 ORTHO05D009086 4.2e-12 73.9 55 61.8
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 4.2e-12 73.9 49 71.4
Aa31LG8G5770 Aethionema arabicum HOM05D000086 ORTHO05D008850 1.2e-11 72.4 55 61.8
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 1.6e-11 72.0 40 80.0
HPP92_000754 Vanilla planifolia HOM05D001821 ORTHO05D009086 2.7e-11 71.2 55 60.0
BcaC07g37055 Brassica carinata HOM05D003421 ORTHO05D009086 3.5e-11 70.9 46 69.6
Sabra09G0084100 Salix brachista HOM05D007602 ORTHO05D009086 6.1e-11 70.1 44 72.7
MD11G1171200 Malus domestica HOM05D007602 ORTHO05D009086 6.7e-10 66.6 47 66.0
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 1.1e-09 65.9 35 82.9
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 1.1e-09 65.9 35 82.9
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 7.4e-09 63.2 36 77.8
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 9.7e-09 62.8 34 79.4
Nn5g29444 Nelumbo nucifera HOM05D007602 ORTHO05D009086 4.8e-08 60.5 59 52.5
AUR62037762 Chenopodium quinoa HOM05D007602 ORTHO05D009086 8.2e-08 59.7 44 59.1
vmacro19447 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 1.8e-07 58.5 40 70.0
AUR62038779 Chenopodium quinoa HOM05D007602 ORTHO05D009086 3.1e-07 57.8 55 50.9
CSS0032371 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 4.1e-07 57.4 35 71.4
Pp3c6_6800 Physcomitrium patens HOM05D007602 ORTHO05D009086 4.1e-07 57.4 54 48.1
Ah.01g019750 Amaranthus hybridus HOM05D007602 ORTHO05D009086 6.9e-07 56.6 40 70.0
Mapoly0014s0113 Marchantia polymorpha HOM05D007602 ORTHO05D009086 1.5e-06 55.5 52 44.2
Pp3c5_22850 Physcomitrium patens HOM05D007602 ORTHO05D009086 1.5e-06 55.5 54 46.3
Psat7g206800 Pisum sativum HOM05D007602 ORTHO05D009086 2.6e-06 54.7 32 81.2
vmacro23386 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 3.4e-06 54.3 33 72.7


User provided reference genes

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