Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 1.5e-47 192.6 99 100.0
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.0e-45 184.9 99 97.0
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.0e-45 184.9 99 97.0
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.0e-45 184.9 99 97.0
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.2e-43 178.7 99 93.9
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.4e-42 175.3 99 91.9
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.1e-42 174.5 99 91.9
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 1.2e-41 172.9 99 87.9
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.7e-41 171.8 99 89.9
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.9e-41 170.6 99 88.9
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.9e-41 170.6 99 88.9
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 1.7e-40 169.1 99 85.9
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 3.8e-40 167.9 99 86.9
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 3.8e-40 167.9 99 86.9
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 5.0e-40 167.5 99 83.8
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 5.0e-40 167.5 99 83.8
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 5.0e-40 167.5 99 83.8
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.0e-40 167.5 99 87.9
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 8.6e-40 166.8 99 82.8
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-39 166.4 99 84.8
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 1.5e-39 166.0 99 86.9
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 5.5e-39 164.1 99 80.8
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 7.2e-39 163.7 99 84.8
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 2.1e-38 162.2 99 82.8
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 4.7e-38 161.0 99 81.8
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 6.1e-38 160.6 98 82.7
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 6.1e-38 160.6 98 82.7
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 1.0e-37 159.8 99 81.8
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.0e-37 159.8 99 79.8
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 1.4e-37 159.5 99 80.8
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 1.4e-37 159.5 99 82.8
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 2.3e-37 158.7 99 80.8
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.0e-37 158.3 99 80.8
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 4.0e-37 157.9 99 81.8
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 5.2e-37 157.5 93 83.9
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 8.8e-37 156.8 99 80.8
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 1.2e-36 156.4 99 79.8
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 1.5e-36 156.0 99 79.8
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 1.5e-36 156.0 99 79.8
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 6.3e-35 150.6 75 97.3
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 1.8e-34 149.1 100 80.0
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 3.1e-34 148.3 99 76.8
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 5.4e-34 147.5 98 78.6
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 5.9e-33 144.1 99 73.7
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.0e-32 143.3 99 73.7
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 8.6e-32 140.2 78 89.7
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.1e-31 139.8 75 89.3
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.4e-29 132.9 76 93.4
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 6.8e-29 130.6 74 82.4
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 6.8e-29 130.6 74 82.4
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 2.2e-27 125.6 75 78.7
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-26 123.2 78 80.8
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.8e-26 122.5 75 76.0
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.0e-24 116.7 76 72.4
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 4.3e-23 111.3 67 79.1
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 6.2e-22 107.5 56 94.6
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 6.2e-22 107.5 60 93.3
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 1.5e-20 102.8 73 78.1
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.5e-20 102.8 73 78.1
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.5e-20 102.8 73 78.1
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 7.5e-20 100.5 63 71.4
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 9.8e-20 100.1 61 86.9
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 3.5e-17 91.7 65 64.6
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 1.7e-11 72.8 43 74.4
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 2.9e-11 72.0 97 43.3
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 6.4e-11 70.9 46 69.6
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 1.9e-10 69.3 41 75.6
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 9.5e-07 57.0 41 68.3
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 1.6e-06 56.2 82 45.1
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 6.2e-06 54.3 30 76.7
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 6.2e-06 54.3 30 76.7
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 6.2e-06 54.3 30 76.7
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 6.2e-06 54.3 30 76.7


User provided reference genes

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