Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 4.5e-98 361.7 244 100.0
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 6.1e-55 218.4 206 70.4
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 3.3e-53 212.6 200 72.5
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 1.2e-50 204.1 200 63.0
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 3.5e-50 202.6 204 66.7
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.7e-49 200.3 204 66.2
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 5.5e-48 195.3 204 65.2
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 3.0e-38 162.9 202 47.5
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 5.2e-38 162.2 222 45.5
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 1.3e-36 157.5 204 45.6
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.1e-35 154.5 203 48.3
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 2.4e-35 153.3 198 47.5
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 4.1e-35 152.5 208 45.7
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.0e-34 150.2 187 50.8
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 7.8e-34 148.3 201 44.8
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 5.0e-33 145.6 212 45.3
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 5.6e-32 142.1 187 56.1
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 1.2e-29 134.4 211 43.1
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 1.2e-29 134.4 202 49.0
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 3.4e-29 132.9 209 42.1
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.0e-26 123.6 218 43.6
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 3.5e-26 122.9 191 44.0
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 1.3e-25 120.9 220 36.4
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 2.3e-25 120.2 220 48.6
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 2.3e-25 120.2 200 52.0
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.3e-25 120.2 218 45.0
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.1e-24 117.9 204 39.7
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 1.9e-24 117.1 218 44.5
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 1.9e-24 117.1 221 44.8
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 2.5e-24 116.7 204 38.7
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 3.3e-24 116.3 221 40.7
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 2.1e-23 113.6 200 39.5
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 4.7e-23 112.5 215 37.7
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 6.2e-23 112.1 205 44.4
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 1.4e-22 110.9 206 38.8
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 4.0e-22 109.4 228 36.4
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 4.0e-22 109.4 228 35.5
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 4.0e-22 109.4 198 36.4
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 4.0e-22 109.4 231 37.2
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 5.2e-22 109.0 240 37.1
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 6.8e-22 108.6 199 38.2
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 8.9e-22 108.2 213 50.7
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 8.9e-22 108.2 221 38.5
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 1.2e-21 107.8 200 39.5
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 1.2e-21 107.8 205 38.0
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 2.0e-21 107.1 204 48.0
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 2.0e-21 107.1 211 37.9
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 2.6e-21 106.7 202 48.5
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 4.4e-21 105.9 232 37.5
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 5.8e-21 105.5 197 38.1
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 9.8e-21 104.8 232 35.3
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 9.8e-21 104.8 205 39.0
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 1.3e-20 104.4 206 38.3
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 2.9e-20 103.2 197 37.1
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 2.9e-20 103.2 224 41.1
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 8.3e-20 101.7 226 35.0
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 8.3e-20 101.7 234 42.3
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 1.4e-19 100.9 229 35.4
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 1.4e-19 100.9 229 34.9
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.4e-19 100.9 229 34.9
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 1.4e-19 100.9 221 46.2
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 1.9e-19 100.5 205 37.1
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 2.4e-19 100.1 213 36.6
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 4.1e-19 99.4 224 44.2
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 5.4e-19 99.0 233 34.3
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 1.6e-18 97.4 214 36.4
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 2.1e-18 97.1 199 37.7
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 2.7e-18 96.7 225 36.0
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 2.7e-18 96.7 226 34.1
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 4.6e-18 95.9 204 46.1
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 1.7e-17 94.0 203 36.0
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 3.9e-17 92.8 199 36.2
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 6.6e-17 92.0 206 36.9
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 8.6e-17 91.7 199 36.7
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 1.1e-16 91.3 206 35.0
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 1.9e-16 90.5 236 32.2
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 2.5e-16 90.1 216 32.9
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 2.5e-16 90.1 216 32.9
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 7.3e-16 88.6 208 41.3
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 3.6e-15 86.3 96 51.0
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 4.7e-15 85.9 212 32.1
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 1.4e-14 84.3 200 35.0
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 5.2e-14 82.4 192 40.6
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 2.0e-13 80.5 188 34.6
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 3.4e-13 79.7 198 33.8
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 4.4e-13 79.3 224 33.9
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 5.8e-13 79.0 172 40.1
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 1.7e-12 77.4 175 41.7
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 4.9e-12 75.9 175 34.3
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 8.3e-12 75.1 169 33.1
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 2.1e-10 70.5 219 32.4
Lalb_Chr17g0343611 Lupinus albus HOM05D007332 ORTHO05D009297 3.0e-09 66.6 197 35.5
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 8.6e-09 65.1 177 35.6
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 9.5e-08 61.6 189 31.2
PGSC0003DMG401029181 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.2e-07 61.2 68 52.9
Sed0015452 Sechium edule HOM05D007332 ORTHO05D009297 3.6e-07 59.7 164 34.8
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 4.7e-07 59.3 200 32.5
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 6.2e-07 58.9 200 30.0
CANSAT25G2745 Cannabis sativa HOM05D007332 ORTHO05D009297 8.1e-07 58.5 214 34.6
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 3.1e-06 56.6 220 35.0
MBI06_g45442_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 3.1e-06 56.6 97 40.2


User provided reference genes

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