Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 4.9e-241 837.4 431 100.0
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 7.8e-231 803.5 431 95.8
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 7.8e-231 803.5 431 95.8
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 3.3e-229 798.1 431 95.1
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.1e-228 795.4 431 94.4
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 4.6e-223 777.7 431 93.3
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 3.3e-213 745.0 427 91.3
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 2.6e-210 735.3 431 84.5
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 3.2e-208 728.4 431 87.0
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 4.2e-208 728.0 431 83.8
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 9.7e-205 716.8 434 84.1
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.8e-204 715.3 432 86.3
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 8.2e-204 713.8 432 85.4
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.1e-203 713.4 432 85.0
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 3.1e-203 711.8 434 86.4
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 2.9e-201 705.3 431 81.0
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.9e-201 705.3 432 83.8
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 5.0e-201 704.5 432 84.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 6.5e-201 704.1 432 82.2
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 6.5e-201 704.1 430 84.4
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.9e-200 702.6 432 84.3
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 4.2e-200 701.4 431 84.2
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.2e-200 700.7 432 81.9
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 7.2e-200 700.7 429 83.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 1.6e-199 699.5 432 84.7
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.7e-199 698.7 434 85.0
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 1.4e-198 696.4 431 84.9
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.0e-198 695.3 434 83.6
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 6.7e-198 694.1 446 79.1
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 6.7e-198 694.1 433 82.4
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 6.7e-198 694.1 432 85.0
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 7.4e-197 690.6 428 81.5
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 9.7e-197 690.3 433 82.9
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 2.8e-196 688.7 455 81.1
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 2.8e-196 688.7 431 82.6
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 1.8e-195 686.0 431 81.7
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 3.1e-195 685.3 431 81.0
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 3.1e-195 685.3 432 83.8
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 4.1e-195 684.9 431 81.0
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-194 683.3 431 80.7
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 1.5e-194 682.9 438 81.7
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.5e-194 682.9 433 81.5
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.0e-194 682.6 440 82.5
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.6e-194 682.2 431 80.3
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.5e-194 681.4 433 81.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 4.5e-194 681.4 431 82.1
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.7e-193 679.5 429 82.5
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.1e-192 676.8 436 81.2
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.5e-192 675.6 429 79.3
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.2e-192 675.2 439 81.5
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 3.2e-192 675.2 436 79.1
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 7.2e-192 674.1 383 87.2
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 7.2e-192 674.1 431 80.7
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.6e-191 672.9 436 78.7
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.7e-191 672.2 442 80.3
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.7e-191 672.2 435 81.1
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 7.9e-191 670.6 371 91.1
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.4e-190 669.8 432 81.2
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.4e-190 669.8 429 81.8
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 3.0e-190 668.7 436 80.7
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 3.0e-190 668.7 436 80.7
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 3.9e-190 668.3 433 80.4
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 3.9e-190 668.3 436 80.5
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 8.8e-190 667.2 428 81.5
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.8e-190 667.2 431 80.3
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 2.6e-189 665.6 436 78.4
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.6e-189 665.6 426 80.3
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 1.3e-188 663.3 442 77.8
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 4.8e-188 661.4 432 81.7
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 6.3e-188 661.0 452 79.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 6.3e-188 661.0 400 85.5
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 8.2e-188 660.6 432 81.2
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.1e-187 658.7 431 81.2
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 4.1e-187 658.3 433 80.6
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 5.3e-187 657.9 431 81.2
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 9.1e-187 657.1 460 74.8
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 9.1e-187 657.1 429 81.1
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 9.1e-187 657.1 429 81.1
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 7.7e-186 654.1 414 82.9
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 7.7e-186 654.1 441 78.9
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.7e-185 652.9 431 81.0
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 2.9e-185 652.1 430 79.8
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.1e-184 650.2 412 82.5
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.4e-184 647.1 431 75.9
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.1e-183 646.0 435 79.3
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 2.1e-183 646.0 434 80.4
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 3.6e-183 645.2 431 78.9
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 4.7e-183 644.8 432 79.4
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.0e-181 639.4 433 78.1
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 2.6e-181 639.0 434 79.7
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 7.2e-176 620.9 433 76.9
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 9.4e-176 620.5 432 76.9
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 9.4e-176 620.5 397 82.1
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.2e-175 620.2 383 84.1
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 3.6e-175 618.6 328 91.2
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 6.1e-175 617.8 336 88.7
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 6.1e-175 617.8 432 73.8
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.4e-174 616.7 429 73.9
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 4.4e-173 611.7 441 75.5
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 4.4e-173 611.7 441 75.5
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 5.7e-173 611.3 432 73.4
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 3.8e-169 598.6 436 75.0
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.9e-168 596.3 376 76.6
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 7.2e-168 594.3 431 73.3
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 7.2e-168 594.3 402 74.9
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 4.7e-167 591.7 416 73.1
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 3.4e-165 585.5 315 89.5
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 3.4e-165 585.5 419 70.4
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 7.5e-165 584.3 415 73.0
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 1.1e-163 580.5 382 80.9
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 5.9e-162 574.7 363 76.9
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 5.9e-162 574.7 368 75.3
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 5.9e-162 574.7 405 70.4
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.6e-149 532.7 365 74.0
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 1.4e-147 526.9 283 91.2
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 9.2e-147 524.2 430 64.0
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 7.8e-146 521.2 440 62.3
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 5.0e-145 518.5 371 76.3
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 5.0e-145 518.5 375 70.9
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.5e-144 516.2 432 63.2
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.3e-144 515.8 433 63.3
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 5.6e-144 515.0 433 63.0
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 2.1e-143 513.1 433 63.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.6e-143 512.3 433 64.9
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 4.0e-142 508.8 431 63.1
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 4.0e-142 508.8 431 63.1
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 6.8e-142 508.1 431 63.1
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 4.4e-141 505.4 351 77.8
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 3.7e-140 502.3 433 62.4
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 2.4e-139 499.6 433 61.9
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 2.1e-135 486.5 335 76.4
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.0e-129 467.6 454 60.1
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 4.9e-124 448.7 295 79.7
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.5e-122 442.6 344 61.9
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.3e-121 439.9 339 62.5
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 3.6e-119 432.6 351 67.5
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.4e-115 420.6 312 67.0
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.1e-114 416.8 282 73.4
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 6.6e-113 411.8 326 69.6
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 4.9e-108 395.6 224 87.9
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.3e-87 327.8 216 78.2
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.8e-76 289.7 234 66.2
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.4e-75 287.7 192 75.5
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 1.9e-67 260.8 249 57.0
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.4e-62 244.6 297 49.8
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.2e-61 241.5 276 49.3
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-57 228.0 187 61.5
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.6e-56 223.8 139 74.8
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-54 218.4 187 59.4
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.7e-50 203.8 311 39.2
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.7e-47 194.5 183 54.6
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 6.3e-47 192.6 173 57.2
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.4e-46 190.7 148 68.9
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-45 188.3 101 86.1
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 6.6e-44 182.6 100 89.0
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.1e-43 181.8 101 83.2
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 2.5e-43 180.6 176 60.8
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 2.5e-43 180.6 104 84.6
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-40 171.4 183 51.9
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 7.5e-40 169.1 100 80.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.3e-36 157.5 77 92.2
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 5.6e-35 152.9 135 63.0
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.2e-34 151.8 212 39.6
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.6e-34 151.4 122 66.4
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 8.0e-34 149.1 76 88.2
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.3e-27 126.7 72 87.5
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.6e-24 117.5 74 79.7
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.3e-20 105.1 106 55.7
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.5e-19 101.7 186 37.6
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 1.2e-13 82.0 49 81.6
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 3.9e-12 77.0 74 60.8
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 3.9e-12 77.0 74 60.8
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.1e-11 75.5 53 66.0
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.4e-09 67.8 90 47.8
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.1e-09 67.4 36 88.9
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 5.2e-09 66.6 59 61.0


User provided reference genes

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