Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 3.8e-55 218.0 116 100.0
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 5.7e-43 177.6 120 80.0
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 1.5e-40 169.5 116 76.7
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 2.6e-40 168.7 116 75.9
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 5.9e-40 167.5 117 75.2
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 7.7e-40 167.2 117 77.8
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 3.8e-39 164.9 117 76.1
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 9.7e-35 150.2 118 66.1
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 4.8e-34 147.9 116 65.5
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 6.3e-34 147.5 117 66.7
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 8.2e-34 147.1 117 67.5
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 3.1e-33 145.2 118 69.5
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 3.1e-33 145.2 117 68.4
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 4.1e-33 144.8 119 69.7
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 1.2e-32 143.3 118 68.6
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 7.7e-32 140.6 116 65.5
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 2.9e-31 138.7 121 58.7
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 2.9e-31 138.7 119 58.0
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.1e-30 136.7 115 66.1
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 1.1e-30 136.7 115 63.5
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.5e-30 136.3 116 61.2
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 9.4e-30 133.7 115 65.2
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 1.2e-29 133.3 117 57.3
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.6e-29 131.7 104 67.3
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 3.6e-29 131.7 119 57.1
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 1.0e-28 130.2 117 62.4
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.4e-28 129.8 119 62.2
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 5.2e-28 127.9 119 57.1
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 5.2e-28 127.9 119 58.0
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 5.2e-28 127.9 118 61.0
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 5.2e-28 127.9 119 61.3
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 1.5e-27 126.3 98 61.2
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 4.4e-27 124.8 119 56.3
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 5.7e-27 124.4 97 61.9
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 9.7e-27 123.6 120 55.8
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 1.7e-26 122.9 111 56.8
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 2.2e-26 122.5 119 60.5
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 3.7e-26 121.7 120 54.2
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 4.8e-26 121.3 120 54.2
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 8.2e-26 120.6 117 56.4
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 8.2e-26 120.6 111 56.8
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 2.4e-25 119.0 120 53.3
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 3.1e-25 118.6 118 58.5
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 3.1e-25 118.6 118 58.5
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 7.0e-25 117.5 120 56.7
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 1.6e-24 116.3 117 53.0
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 2.0e-24 115.9 110 59.1
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 3.5e-24 115.2 112 52.7
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 3.5e-24 115.2 119 55.5
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 4.5e-24 114.8 120 55.0
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 5.9e-24 114.4 99 62.6
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 7.7e-24 114.0 117 50.4
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 7.7e-24 114.0 113 58.4
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 1.0e-23 113.6 96 63.5
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 1.3e-23 113.2 118 55.1
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 1.3e-23 113.2 118 55.1
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 2.9e-23 112.1 121 52.1
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 5.0e-23 111.3 116 53.4
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 5.0e-23 111.3 116 53.4
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 1.1e-22 110.2 120 51.7
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 1.1e-22 110.2 116 53.4
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 1.5e-22 109.8 118 53.4
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 1.5e-22 109.8 119 53.8
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 1.9e-22 109.4 118 52.5
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 1.9e-22 109.4 99 55.6
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 5.5e-22 107.8 117 46.2
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 5.5e-22 107.8 119 51.3
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 7.2e-22 107.5 118 51.7
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 7.2e-22 107.5 116 52.6
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 2.1e-21 105.9 117 53.0
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 3.6e-21 105.1 119 50.4
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 6.1e-21 104.4 118 51.7
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 6.1e-21 104.4 99 55.6
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 1.0e-20 103.6 98 53.1
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 4.0e-20 101.7 109 53.2
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 8.8e-20 100.5 120 49.2
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 3.4e-19 98.6 119 49.6
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 4.4e-19 98.2 117 49.6
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 4.4e-19 98.2 117 49.6
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 7.5e-19 97.4 84 58.3
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 1.3e-18 96.7 103 50.5
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 1.7e-18 96.3 126 45.2
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 2.2e-18 95.9 90 56.7
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 3.7e-18 95.1 97 49.5
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 8.3e-18 94.0 117 47.9
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 1.1e-17 93.6 96 54.2
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.8e-17 92.8 96 54.2
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.7e-16 89.0 70 62.9
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.7e-16 89.0 97 50.5
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 4.5e-16 88.2 97 49.5
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.0e-15 87.0 97 49.5
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 2.9e-15 85.5 76 57.9
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 2.9e-15 85.5 113 46.0
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 6.5e-15 84.3 116 43.1
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 8.5e-15 84.0 105 43.8
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 3.0e-12 75.5 113 40.7
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 1.5e-11 73.2 94 42.6
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 3.4e-11 72.0 106 43.4
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 3.4e-11 72.0 89 44.9
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 2.2e-10 69.3 63 58.7
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 8.3e-10 67.4 74 47.3
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 1.3e-07 60.1 66 45.5
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 2.3e-07 59.3 75 45.3
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 2.3e-07 59.3 75 45.3
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 2.3e-07 59.3 100 37.0
Peaxi162Scf17552g00001 Petunia axillaris HOM05D007246 ORTHO05D009066 2.9e-07 58.9 63 52.4
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 1.9e-06 56.2 38 57.9
SEGI_11751 Sequoiadendron giganteum HOM05D007246 ORTHO05D009066 1.9e-06 56.2 99 35.4


User provided reference genes

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