Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 5.1e-224 781.2 524 100.0
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 5.5e-162 575.1 475 81.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 3.3e-159 565.8 475 75.2
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.2e-155 553.1 475 80.4
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.0e-155 552.0 475 80.4
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-151 540.0 475 79.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.7e-142 509.2 475 76.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.6e-140 503.8 477 64.4
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.8e-133 480.3 475 64.0
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.7e-132 476.5 456 72.8
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.7e-132 476.5 456 75.2
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.1e-130 471.1 526 63.9
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.6e-124 449.1 475 66.1
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.5e-122 444.1 499 60.1
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.8e-120 437.2 475 63.8
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 8.9e-120 434.9 473 56.9
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.2e-119 434.5 476 56.1
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.0e-119 433.7 477 61.2
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 8.3e-118 428.3 485 61.4
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.3e-115 421.0 473 55.6
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.3e-115 421.0 473 61.1
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 1.3e-115 421.0 444 59.7
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 3.0e-115 419.9 455 62.9
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 7.3e-114 415.2 476 58.2
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 4.7e-113 412.5 455 61.8
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 5.8e-111 405.6 485 60.0
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.3e-110 404.4 455 56.5
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.9e-110 403.3 451 57.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 6.4e-110 402.1 568 50.5
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.2e-108 397.9 447 60.0
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 6.6e-107 392.1 481 53.6
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.1e-106 391.3 455 58.7
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 5.2e-104 382.5 461 54.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.4e-103 379.8 471 57.5
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.4e-103 379.8 551 52.3
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 4.4e-103 379.4 472 53.8
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 1.7e-102 377.5 439 57.2
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 4.9e-102 375.9 459 52.3
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 9.3e-101 371.7 471 53.3
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 9.3e-101 371.7 470 57.4
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.7e-100 370.2 400 65.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 3.5e-100 369.8 465 55.9
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.3e-99 367.9 453 56.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 6.6e-99 365.5 471 54.1
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.1e-98 364.8 451 51.4
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 4.3e-98 362.8 476 49.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 9.6e-98 361.7 471 55.0
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.1e-97 360.5 471 55.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.6e-95 353.6 462 54.1
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 7.6e-95 352.1 476 48.3
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.7e-94 350.9 480 53.3
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 2.9e-94 350.1 458 52.0
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 8.4e-94 348.6 454 55.5
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.1e-93 348.2 452 59.1
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.7e-92 343.6 470 54.5
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.3e-91 340.5 455 53.4
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 5.1e-91 339.3 474 47.9
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.1e-90 338.2 435 50.3
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 5.3e-88 329.3 463 46.9
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 3.4e-87 326.6 585 45.6
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 2.2e-86 323.9 460 54.3
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 8.4e-86 322.0 427 51.3
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.0e-83 315.1 469 46.3
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 3.0e-83 313.5 464 45.5
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 3.9e-83 313.2 466 47.9
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.9e-82 310.8 437 53.1
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.9e-82 310.8 466 48.5
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.5e-82 310.5 367 58.9
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 9.6e-82 308.5 458 48.7
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-81 307.8 495 51.1
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.8e-81 307.0 424 48.8
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.8e-81 306.2 462 44.2
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.4e-80 303.9 431 52.4
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 3.1e-80 303.5 461 45.8
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 5.3e-80 302.8 451 51.0
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.1e-77 295.0 445 44.7
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.4e-77 294.7 441 45.8
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 7.1e-77 292.4 408 45.8
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 5.1e-75 286.2 474 41.8
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 8.7e-75 285.4 448 46.9
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.9e-74 284.3 472 42.2
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.9e-74 284.3 459 49.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 2.2e-73 280.8 286 60.1
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 6.3e-73 279.3 445 48.5
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 4.1e-72 276.6 449 43.9
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 3.4e-71 273.5 461 41.4
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.7e-70 271.2 457 41.4
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.9e-70 270.4 451 44.1
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.2e-69 266.9 439 43.5
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.7e-68 263.8 428 43.5
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 4.6e-68 263.1 443 41.8
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 6.1e-68 262.7 458 44.1
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 2.3e-67 260.8 447 42.5
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.5e-66 258.1 445 43.6
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.9e-66 257.7 450 41.6
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.5e-66 257.3 447 43.0
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.3e-65 255.0 463 40.2
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.2e-65 254.2 415 50.1
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.4e-64 251.5 433 44.1
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.4e-64 250.8 475 42.7
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.0e-63 247.7 389 44.7
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 5.9e-63 246.1 453 40.0
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.9e-63 246.1 433 46.0
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.7e-62 244.6 459 40.1
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 6.5e-62 242.7 451 40.1
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 5.5e-61 239.6 466 48.1
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 3.0e-59 233.8 342 47.1
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 9.7e-58 228.8 353 51.3
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.4e-56 224.2 439 39.4
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 3.2e-53 213.8 451 38.1
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 2.6e-47 194.1 168 65.5
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 5.2e-43 179.9 377 49.3
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 5.0e-38 163.3 206 47.6
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 6.1e-36 156.4 337 38.9
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.2e-35 153.3 135 64.4
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 6.3e-33 146.4 296 37.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.5e-31 140.2 289 38.1
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.3e-30 137.9 94 74.5
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 7.2e-29 132.9 477 27.9
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 2.8e-28 131.0 496 34.9
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 4.7e-28 130.2 146 52.7
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.3e-25 122.1 465 36.6
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.8e-25 120.9 424 26.9
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.6e-23 115.2 318 33.0
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 2.3e-22 111.3 202 41.1
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.4e-19 102.1 101 54.5
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.8e-19 101.7 423 27.7
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 6.8e-19 99.8 60 80.0
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 2.9e-17 94.4 106 47.2
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 2.4e-16 91.3 63 73.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.9e-14 84.0 356 27.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.3e-13 80.5 58 65.5
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.4e-11 75.5 69 58.0
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.0e-10 71.6 74 54.1
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.4e-10 70.5 57 56.1
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 9.2e-08 62.8 38 71.1
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 6.6e-06 56.6 85 37.6


User provided reference genes

Program Settings