Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 2.3e-93 345.5 172 100.0
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 8.6e-64 247.3 139 89.2
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 4.6e-57 224.9 139 80.6
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 3.0e-48 195.7 131 75.6
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 6.7e-48 194.5 119 81.5
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 3.7e-46 188.7 134 69.4
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 8.1e-46 187.6 139 69.8
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 1.1e-45 187.2 129 73.6
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 2.4e-45 186.0 131 72.5
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 4.0e-45 185.3 139 70.5
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 4.0e-45 185.3 138 70.3
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 9.0e-45 184.1 134 67.2
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 3.4e-44 182.2 137 67.9
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 4.5e-44 181.8 130 71.5
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 4.5e-44 181.8 119 74.8
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 5.8e-44 181.4 134 64.9
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 5.8e-44 181.4 137 65.0
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 7.6e-44 181.0 134 64.9
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 9.9e-44 180.6 132 70.5
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 2.2e-43 179.5 112 76.8
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 4.9e-43 178.3 112 75.9
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 6.4e-43 177.9 122 68.9
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 1.1e-42 177.2 140 64.3
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 1.1e-42 177.2 113 75.2
Gohir.A05G233900 Gossypium hirsutum HOM05D007294 ORTHO05D009205 1.9e-42 176.4 99 84.8
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.9e-42 176.4 141 64.5
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 9.3e-42 174.1 106 78.3
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 1.2e-41 173.7 132 65.9
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 1.6e-41 173.3 114 75.4
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 1.6e-41 173.3 114 75.4
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 1.6e-41 173.3 126 69.0
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 1.6e-41 173.3 133 69.2
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 2.1e-41 172.9 142 66.2
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 2.7e-41 172.6 99 84.8
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 2.7e-41 172.6 99 84.8
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 2.7e-41 172.6 108 77.8
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 3.5e-41 172.2 132 65.2
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 4.6e-41 171.8 126 69.0
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 4.6e-41 171.8 137 62.8
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 6.0e-41 171.4 138 63.8
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 1.3e-40 170.2 128 68.0
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 1.8e-40 169.9 99 79.8
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 3.9e-40 168.7 115 71.3
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 5.1e-40 168.3 126 68.3
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 5.1e-40 168.3 115 73.0
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 6.7e-40 167.9 105 81.0
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 8.7e-40 167.5 134 62.7
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 1.1e-39 167.2 105 77.1
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 1.1e-39 167.2 108 76.9
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 2.5e-39 166.0 131 64.9
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 4.3e-39 165.2 102 76.5
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 1.6e-38 163.3 109 72.5
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 1.6e-38 163.3 132 66.7
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 2.1e-38 162.9 129 68.2
TWI12G0925 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 2.1e-38 162.9 96 77.1
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 2.8e-38 162.5 117 67.5
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 3.7e-38 162.2 101 77.2
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 3.7e-38 162.2 142 66.2
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 3.7e-38 162.2 104 76.0
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 6.2e-38 161.4 123 65.0
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 4.0e-37 158.7 129 65.1
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 5.3e-37 158.3 115 67.0
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 5.3e-37 158.3 106 71.7
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 6.9e-37 157.9 104 75.0
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 1.2e-36 157.1 107 71.0
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 1.2e-36 157.1 93 78.5
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 1.5e-36 156.8 127 63.0
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 2.0e-36 156.4 99 76.8
AUR62023647 Chenopodium quinoa HOM05D007294 ORTHO05D009205 4.5e-36 155.2 137 60.6
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 1.3e-35 153.7 109 74.3
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 1.9e-34 149.8 87 78.2
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 2.5e-34 149.4 101 68.3
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 2.5e-34 149.4 117 64.1
Os02g0767900 Oryza sativa ssp. japonica HOM05D007294 ORTHO05D009205 4.2e-34 148.7 99 73.7
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 3.5e-33 145.6 89 76.4
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 7.9e-33 144.4 115 63.5
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 7.9e-33 144.4 110 63.6
Zm00001eb256090 Zea mays HOM05D007294 ORTHO05D009205 7.9e-33 144.4 93 77.4
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 1.0e-32 144.1 102 68.6
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 1.3e-32 143.7 108 66.7
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 6.7e-32 141.4 110 65.5
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 3.3e-31 139.0 146 54.8
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 5.7e-31 138.3 117 59.8
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 9.7e-31 137.5 98 63.3
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 1.6e-30 136.7 103 65.0
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 2.8e-30 136.0 108 63.9
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 4.8e-30 135.2 119 63.0
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 5.3e-29 131.7 112 58.0
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 6.9e-29 131.3 101 66.3
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 1.2e-28 130.6 78 79.5
Pp3c23_9240 Physcomitrium patens HOM05D007294 ORTHO05D009205 1.2e-28 130.6 91 63.7
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 2.6e-28 129.4 70 82.9
AagrBONN_evm.TU.Sc2ySwM_368.1537 Anthoceros agrestis HOM05D007294 ORTHO05D009205 7.6e-28 127.9 92 62.0
CBR_g48307 Chara braunii HOM05D007294 ORTHO05D009205 5.5e-26 121.7 96 58.3
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 7.2e-26 121.3 83 69.9
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 9.3e-26 120.9 114 56.1
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 1.0e-24 117.5 70 75.7
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 1.3e-24 117.1 81 67.9
CDE08G0173 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 1.5e-23 113.6 73 67.1
Mapoly0007s0151 Marchantia polymorpha HOM05D007294 ORTHO05D009205 7.4e-23 111.3 91 59.3
CDE04G3292 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 1.1e-18 97.4 79 55.7
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 6.1e-17 91.7 91 52.7
CARHR259360 Cardamine hirsuta HOM05D007294 ORTHO05D009205 8.8e-16 87.8 53 79.2
Nn2g14282 Nelumbo nucifera HOM05D007294 ORTHO05D009205 3.4e-12 75.9 42 76.2
MCO13G582 Micromonas commoda HOM05D007294 ORTHO05D009205 5.9e-12 75.1 112 41.1
Peaxi162Scf00395g00315 Petunia axillaris HOM05D007294 ORTHO05D009205 1.4e-10 70.5 112 40.2
Dinv40402 Davidia involucrata HOM05D007294 ORTHO05D009205 1.8e-08 63.5 75 50.7


User provided reference genes

Program Settings