Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 4.3e-74 281.2 136 100.0
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.8e-72 273.9 136 95.6
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 8.9e-72 273.5 136 94.9
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.0e-71 272.3 136 94.1
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 2.0e-71 272.3 136 96.3
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 2.6e-71 271.9 136 94.1
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.4e-71 271.6 136 95.6
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 4.4e-71 271.2 136 93.4
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 5.8e-71 270.8 136 96.3
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 7.5e-71 270.4 136 94.1
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 9.9e-71 270.0 136 95.6
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.3e-70 269.6 136 94.9
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.7e-70 269.2 136 93.4
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 2.2e-70 268.9 136 94.9
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.7e-70 268.1 136 92.6
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.7e-70 268.1 136 92.6
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.7e-70 268.1 136 92.6
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 3.7e-70 268.1 135 94.1
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 93.4
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 93.4
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 93.4
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 94.9
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 93.4
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 6.4e-70 267.3 136 91.9
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 6.4e-70 267.3 136 93.4
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 8.3e-70 266.9 136 91.9
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.4e-69 266.2 136 92.6
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 91.9
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.4e-69 265.4 136 91.2
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 3.2e-69 265.0 136 92.6
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 3.2e-69 265.0 136 94.1
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 4.1e-69 264.6 136 91.2
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 4.1e-69 264.6 136 91.2
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 4.6e-68 261.2 135 90.4
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 89.7
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 88.2
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 88.9
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 87.4
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 86.8
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 89.0
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 6.6e-67 257.3 135 88.1
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 89.7
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 88.2
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.5e-66 256.1 135 87.4
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 89.0
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 86.7
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.5e-66 255.4 133 89.5
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 88.2
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 4.3e-66 254.6 135 89.6
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 86.8
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 88.2
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.8
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 85.3
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 85.3
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 85.3
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 85.3
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 84.6
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 88.2
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 85.3
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 85.3
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 87.5
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 88.2
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 88.2
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.7e-65 251.1 132 90.2
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 84.6
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.1e-64 250.0 134 87.3
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 86.8
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 86.0
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 86.0
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 83.8
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 86.8
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 85.3
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 6.8e-64 247.3 135 85.2
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 87.5
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 85.3
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 84.6
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 84.6
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 84.6
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.9e-62 241.9 124 91.9
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 85.3
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.9e-61 239.2 138 81.9
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.6e-60 236.1 124 87.9
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.5e-60 235.0 130 86.2
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 3.5e-60 235.0 124 89.5
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 4.6e-60 234.6 124 88.7
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 6.0e-60 234.2 124 87.1
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.3e-59 233.0 124 90.3
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 1.7e-59 232.6 131 81.7
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.7e-59 232.6 129 82.9
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 2.5e-58 228.8 124 90.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 9.6e-58 226.9 119 89.1
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 5.2e-56 221.1 133 77.4
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 5.2e-56 221.1 133 76.7
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 6.9e-56 220.7 133 77.4
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 4.4e-55 218.0 138 73.9
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.3e-54 216.5 138 75.4
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 2.2e-54 215.7 132 72.7
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 4.9e-54 214.5 206 55.8
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.9e-53 212.6 133 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 3.9e-51 204.9 131 70.2
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 3.9e-51 204.9 120 80.0
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.1e-50 203.4 136 71.3
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 9.6e-50 200.3 131 70.2
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 2.8e-49 198.7 121 79.3
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 7.6e-47 190.7 153 62.1
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 3.2e-45 185.3 136 63.2
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.2e-44 183.3 92 95.7
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 2.1e-44 182.6 134 62.7
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 3.5e-44 181.8 125 77.6
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 1.6e-41 172.9 128 60.2
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 4.2e-37 158.3 76 94.7
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 4.6e-36 154.8 92 78.3
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 4.6e-36 154.8 74 94.6
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 4.6e-36 154.8 74 93.2
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 4.6e-36 154.8 74 93.2
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.5e-34 149.8 75 86.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.9e-34 149.4 75 84.0
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 1.6e-33 146.4 74 86.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 2.8e-33 145.6 74 83.8
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 2.8e-33 145.6 74 83.8
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.5e-31 138.3 73 82.2
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 6.0e-28 127.9 76 77.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 8.7e-27 124.0 140 52.1
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 4.1e-24 115.2 72 79.2
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 5.3e-24 114.8 136 39.7
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 4.3e-18 95.1 50 94.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 1.3e-17 93.6 47 87.2
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.8e-17 92.4 163 41.7
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 6.3e-17 91.3 117 45.3
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 4.5e-15 85.1 126 39.7
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.9e-11 72.0 70 58.6
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 5.1e-11 71.6 36 83.3
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 4.1e-08 62.0 67 49.3
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 1.3e-06 57.0 141 31.2


User provided reference genes

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