Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 2.0e-267 925.2 480 100.0
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 5.5e-241 837.4 480 91.9
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 2.0e-235 818.9 480 88.3
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.7e-234 815.8 480 89.0
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 3.8e-234 814.7 480 87.9
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.2e-232 809.7 480 87.3
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.5e-230 802.0 479 87.9
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 7.4e-230 800.4 479 87.7
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.4e-225 786.2 479 82.9
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 4.2e-225 784.6 481 85.4
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 1.4e-220 769.6 479 81.4
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 3.8e-218 761.5 480 80.2
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 1.6e-216 756.1 479 79.7
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 1.6e-216 756.1 479 78.9
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.7e-216 754.6 475 80.0
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 6.1e-216 754.2 480 79.4
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.3e-215 752.3 475 80.0
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.8e-212 742.7 475 79.2
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 9.1e-212 740.3 483 78.9
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 5.5e-209 731.1 483 78.5
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.2e-208 729.9 480 77.7
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.6e-208 729.6 479 77.7
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.7e-208 728.8 479 76.2
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.4e-207 726.5 479 76.6
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.5e-206 723.0 480 77.7
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 2.6e-206 722.2 480 77.9
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.6e-206 722.2 516 73.6
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 4.4e-206 721.5 479 77.9
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 2.2e-205 719.2 480 76.2
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 4.8e-205 718.0 479 75.8
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 4.8e-205 718.0 496 75.6
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 8.2e-205 717.2 481 76.7
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 3.1e-204 715.3 479 77.7
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 7.0e-204 714.1 479 76.2
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 9.1e-204 713.8 477 77.6
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 9.1e-204 713.8 479 75.6
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 2.6e-203 712.2 479 76.6
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 2.6e-203 712.2 479 76.0
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.0e-202 710.3 475 76.2
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 1.7e-202 709.5 483 75.4
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 6.5e-202 707.6 476 76.1
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 1.4e-199 699.9 478 76.8
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 1.8e-199 699.5 479 75.4
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 2.6e-198 695.7 480 72.7
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 7.5e-198 694.1 480 74.4
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.3e-197 693.3 479 74.7
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 2.2e-197 692.6 420 82.9
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.1e-196 690.3 480 74.6
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 1.8e-196 689.5 479 75.2
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 7.0e-196 687.6 480 74.0
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.6e-195 686.4 481 73.6
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 3.5e-195 685.3 485 71.5
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 3.5e-195 685.3 478 73.2
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 5.9e-195 684.5 480 74.4
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 7.7e-195 684.1 485 70.9
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 1.0e-194 683.7 479 73.1
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 1.7e-194 682.9 485 70.7
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 2.9e-194 682.2 480 72.7
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.9e-194 682.2 481 72.1
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 2.9e-194 682.2 478 73.2
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 5.0e-194 681.4 485 70.9
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 6.5e-194 681.0 478 74.1
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 8.5e-194 680.6 479 72.7
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 3.2e-193 678.7 477 72.5
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 3.0e-191 672.2 480 72.1
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 8.8e-191 670.6 479 70.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.7e-189 666.4 510 68.2
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 4.8e-189 664.8 479 70.4
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 1.1e-188 663.7 480 71.5
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 2.4e-188 662.5 480 70.8
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 4.1e-188 661.8 479 71.8
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 7.0e-188 661.0 478 71.5
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 7.0e-188 661.0 480 71.2
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 7.0e-188 661.0 480 71.2
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 7.0e-188 661.0 480 71.2
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 9.1e-188 660.6 480 70.6
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 9.1e-188 660.6 480 70.8
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 4.5e-187 658.3 480 71.7
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.9e-185 652.9 474 73.6
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 6.8e-183 644.4 480 70.0
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 1.6e-179 633.3 421 77.2
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 8.6e-178 627.5 534 63.3
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 7.3e-177 624.4 422 74.6
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.5e-174 616.7 486 66.5
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 2.4e-172 609.4 479 67.2
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 1.2e-171 607.1 476 68.1
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 2.0e-171 606.3 480 66.9
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.7e-171 605.9 480 67.5
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.9e-170 602.1 442 72.2
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 6.6e-170 601.3 478 66.3
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 9.5e-169 597.4 375 83.5
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 1.2e-168 597.0 478 65.7
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.6e-168 596.7 469 66.1
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.4e-167 593.6 480 66.7
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.4e-167 593.6 479 66.2
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.2e-166 590.5 432 72.7
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 2.9e-165 585.9 376 79.0
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 1.1e-164 583.9 496 63.5
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 7.1e-164 581.3 580 56.9
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 5.6e-161 571.6 383 74.2
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.1e-156 557.4 379 73.1
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.2e-149 533.1 311 87.5
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 2.5e-145 519.6 338 78.1
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 7.3e-145 518.1 486 57.4
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.6e-144 516.9 480 59.0
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.6e-128 463.8 808 38.9
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.4e-127 460.7 345 67.8
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 2.5e-124 449.9 316 73.7
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.9e-121 440.3 376 59.0
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 5.8e-118 428.7 478 51.0
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.3e-114 417.5 452 52.7
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.9e-114 416.0 450 51.8
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 4.3e-113 412.5 452 52.4
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 6.9e-111 405.2 452 51.5
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 1.7e-109 400.6 453 50.6
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.7e-109 400.6 450 50.9
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 9.4e-108 394.8 453 49.9
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 2.1e-107 393.7 472 49.2
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 1.1e-103 381.3 453 49.2
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 6.1e-99 365.5 249 75.5
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 2.3e-98 363.6 370 53.2
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 5.1e-98 362.5 444 47.1
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 6.7e-98 362.1 369 52.8
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 4.4e-97 359.4 404 52.0
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 4.1e-95 352.8 417 48.0
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 4.5e-94 349.4 228 77.6
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 4.1e-87 326.2 502 42.4
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 5.3e-87 325.9 240 71.7
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.0e-85 321.6 449 45.2
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.6e-78 297.7 251 62.9
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 4.1e-71 273.1 491 36.9
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.8e-59 233.8 317 44.8
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.5e-52 211.5 212 54.7
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.6e-51 206.8 191 58.6
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 6.2e-43 179.5 204 48.0
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 7.6e-41 172.6 102 82.4
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.7e-38 164.1 106 75.5
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.0e-37 162.2 447 30.0
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.6e-33 147.5 520 28.7
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 6.9e-18 96.3 77 67.5
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 6.4e-16 89.7 91 51.6
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 4.2e-15 87.0 143 35.7
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 1.9e-07 61.6 79 44.3


User provided reference genes

Program Settings