Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 6.2e-202 707.2 348 100.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 8.6e-95 351.3 375 59.5
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.8e-83 312.0 323 57.6
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.4e-81 305.4 325 56.6
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-80 304.3 327 57.2
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.2e-51 208.0 362 42.0
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.7e-47 192.2 338 41.7
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 7.4e-46 188.7 358 42.2
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.7e-42 177.6 334 41.0
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.3e-37 159.1 265 41.9
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.7e-31 139.0 253 39.9
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.8e-31 138.7 219 42.9
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.1e-30 138.3 336 37.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.6e-30 137.1 212 43.9
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 4.4e-30 136.3 221 43.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 9.7e-30 135.2 231 40.3
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.7e-29 134.4 327 38.2
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-29 133.3 212 42.9
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 4.8e-29 132.9 274 39.8
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 2.4e-28 130.6 207 42.5
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.4e-22 109.0 103 53.4
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 2.2e-21 107.5 316 33.2
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.7e-21 106.7 189 40.2
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.7e-21 106.7 178 41.0
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.8e-21 106.3 128 49.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.4e-20 104.8 124 46.8
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 2.4e-20 104.0 115 49.6
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.1e-20 103.6 134 44.8
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.3e-20 102.8 203 36.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 7.0e-20 102.4 119 47.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 9.1e-20 102.1 123 52.0
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 9.1e-20 102.1 75 66.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 1.2e-19 101.7 77 59.7
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.6e-19 101.3 179 41.3
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.0e-19 100.9 169 40.2
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.0e-19 100.9 110 48.2
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.6e-19 100.5 80 62.5
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.5e-19 100.1 124 50.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.5e-19 100.1 113 52.2
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 4.5e-19 99.8 212 37.3
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 4.5e-19 99.8 212 37.3
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 5.9e-19 99.4 135 51.1
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 5.9e-19 99.4 141 46.1
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.7e-19 99.0 138 47.1
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.0e-18 98.6 179 42.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-18 98.2 129 47.3
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-18 98.2 120 48.3
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.3e-18 98.2 177 40.7
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.7e-18 97.8 132 48.5
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.7e-18 97.8 177 39.5
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.2e-18 97.4 137 47.4
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.2e-18 97.4 178 41.0
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.2e-18 97.4 178 41.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-18 97.4 75 62.7
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.2e-18 97.4 121 47.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 2.9e-18 97.1 128 48.4
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 2.9e-18 97.1 114 49.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.9e-18 97.1 147 42.2
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.8e-18 96.7 139 43.9
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 5.0e-18 96.3 169 40.2
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.5e-18 95.9 129 47.3
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 6.5e-18 95.9 119 50.4
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 8.5e-18 95.5 144 44.4
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.5e-18 95.5 111 47.7
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.5e-18 95.5 146 44.5
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.5e-18 95.5 144 44.4
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 8.5e-18 95.5 71 57.7
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 8.5e-18 95.5 71 57.7
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.1e-17 95.1 143 42.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.1e-17 95.1 210 36.2
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.9e-17 94.4 163 38.0
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.5e-17 94.0 169 41.4
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.5e-17 94.0 152 40.8
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.5e-17 94.0 67 64.2
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.2e-17 93.6 129 46.5
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.2e-17 93.6 170 40.6
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 4.2e-17 93.2 160 42.5
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 7.2e-17 92.4 173 41.0
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 7.2e-17 92.4 119 47.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 7.2e-17 92.4 119 46.2
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 9.4e-17 92.0 66 66.7
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 9.4e-17 92.0 118 50.0
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 9.4e-17 92.0 61 68.9
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.4e-17 92.0 138 42.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 9.4e-17 92.0 75 62.7
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.2e-16 91.7 63 68.3
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.2e-16 91.7 110 46.4
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 2.1e-16 90.9 177 40.7
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 2.1e-16 90.9 177 40.7
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.7e-16 90.5 154 39.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.6e-16 90.1 134 45.5
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.6e-16 90.1 112 42.9
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 3.6e-16 90.1 236 36.0
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.6e-16 90.1 167 40.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 4.7e-16 89.7 200 39.5
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 4.7e-16 89.7 63 68.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 4.7e-16 89.7 63 68.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 4.7e-16 89.7 288 33.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 8.0e-16 89.0 124 44.4
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.4e-15 88.2 165 40.6
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-15 88.2 230 35.2
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.4e-15 88.2 177 36.7
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-15 87.8 118 43.2
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.0e-15 87.0 119 41.2
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 4.0e-15 86.7 200 35.5
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.2e-15 86.3 119 42.9
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 5.2e-15 86.3 167 37.7
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 6.7e-15 85.9 117 44.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.3e-14 83.6 63 61.9
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.4e-14 83.2 175 37.7
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 7.5e-14 82.4 172 35.5
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.7e-13 81.3 72 55.6
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.8e-13 80.5 75 52.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.8e-13 80.5 75 53.3
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 6.3e-13 79.3 128 37.5
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.3e-13 79.3 102 44.1
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.1e-12 78.6 58 63.8
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.4e-12 78.2 263 30.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.4e-12 78.2 130 38.5
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.8e-12 77.8 86 46.5
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.8e-12 77.8 107 39.3
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.8e-12 77.8 119 40.3
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.1e-12 77.0 93 45.2
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.3e-12 76.3 107 38.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.0e-12 75.9 138 37.0
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 3.5e-11 73.6 113 39.8
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 4.5e-11 73.2 62 61.3
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.2e-10 70.9 67 49.3
Medtr3g073650 Medicago truncatula HOM05D016564 ORTHO05D019006 3.8e-10 70.1 181 34.8
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 5.0e-10 69.7 50 66.0
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 5.0e-10 69.7 68 50.0
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.5e-10 68.9 201 32.3
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.1e-09 68.6 182 33.5
CAN.G689.16 Capsicum annuum HOM05D004520 ORTHO05D005520 2.5e-09 67.4 100 42.0
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 2.5e-09 67.4 109 39.4
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 9.4e-09 65.5 50 62.0
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 9.4e-09 65.5 118 34.7
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 1.6e-08 64.7 132 42.4
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.1e-08 64.3 135 34.1
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 4.7e-08 63.2 46 60.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 8.0e-08 62.4 64 54.7
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.0e-07 62.0 63 50.8
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.3e-07 60.8 60 46.7
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 3.0e-07 60.5 50 58.0
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 3.0e-07 60.5 213 30.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 4.0e-07 60.1 187 32.1
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 8.8e-07 58.9 94 40.4
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.5e-06 58.2 96 41.7
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 2.0e-06 57.8 202 29.2
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.0e-06 57.8 108 35.2
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 2.6e-06 57.4 60 51.7
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 2.6e-06 57.4 60 51.7
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.8e-06 55.5 108 34.3
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 9.8e-06 55.5 84 35.7


User provided reference genes

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