Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.6e-158 562.0 282 100.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 8.0e-91 337.8 289 68.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 6.8e-90 334.7 289 68.2
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.4e-89 332.0 273 69.6
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.1e-84 317.4 252 71.0
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-66 256.5 271 57.2
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-62 244.2 270 55.2
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.8e-62 241.5 271 55.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.3e-61 240.7 279 56.6
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.0e-45 188.0 309 43.0
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.9e-45 186.0 275 45.8
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 3.6e-43 179.5 296 43.2
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.1e-39 165.2 237 46.0
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.6e-36 155.6 264 43.9
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.3e-35 154.5 282 40.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.8e-35 153.3 301 42.2
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.2e-35 152.1 278 40.3
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 8.1e-35 151.8 299 39.1
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.8e-34 150.6 282 40.8
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 2.4e-34 150.2 283 40.6
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 4.0e-34 149.4 287 40.1
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 4.0e-34 149.4 318 37.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 6.9e-34 148.7 289 41.2
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-33 147.5 138 63.0
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-33 146.4 149 59.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.8e-33 145.6 180 50.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 7.6e-33 145.2 239 41.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.7e-32 144.1 262 42.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.8e-32 142.9 292 39.7
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.8e-32 142.9 137 62.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.4e-32 141.7 212 46.2
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 8.4e-32 141.7 264 40.9
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.4e-32 141.7 212 46.2
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 8.4e-32 141.7 290 41.7
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.4e-31 141.0 261 42.5
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.4e-31 141.0 198 43.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 4.2e-31 139.4 294 39.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 5.4e-31 139.0 272 41.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 7.1e-31 138.7 249 39.4
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-30 137.9 165 53.9
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.2e-30 137.9 238 41.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.1e-30 137.1 284 42.3
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.1e-30 137.1 289 40.8
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-30 137.1 274 39.1
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 4.6e-30 136.0 220 47.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.7e-29 134.0 278 39.2
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.7e-29 134.0 278 39.2
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-29 133.7 278 39.2
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-29 133.3 272 40.8
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 6.6e-29 132.1 135 55.6
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 3.3e-28 129.8 285 35.4
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.6e-28 129.0 180 51.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 9.6e-28 128.3 135 55.6
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.3e-27 127.9 236 38.6
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.6e-27 127.5 271 34.7
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.6e-27 127.5 246 40.7
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.8e-27 126.7 248 40.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.8e-27 126.7 180 50.0
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.1e-26 124.8 233 38.2
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-26 124.4 179 49.7
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.1e-26 123.2 270 38.1
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 6.9e-26 122.1 300 35.7
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.2e-25 121.3 140 47.9
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.2e-25 121.3 206 41.3
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-25 120.9 154 48.7
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.0e-25 120.6 238 37.8
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 4.5e-25 119.4 246 38.2
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.2e-24 117.1 232 36.2
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.2e-24 117.1 159 44.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 2.2e-24 117.1 263 36.9
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.1e-23 114.8 129 50.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.4e-23 114.4 241 37.3
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 2.4e-23 113.6 193 43.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 5.5e-23 112.5 129 48.8
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 7.1e-23 112.1 292 33.2
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.2e-22 111.3 150 42.0
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.6e-22 110.9 183 43.2
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 6.0e-22 109.0 135 48.1
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.0e-22 109.0 176 40.9
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.0e-21 108.2 128 50.0
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.8e-21 107.5 180 45.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.8e-21 107.5 237 33.8
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.0e-21 106.7 130 50.8
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.5e-20 104.4 199 35.2
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.9e-20 104.0 251 35.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.3e-20 102.8 231 34.2
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 9.6e-20 101.7 103 54.4
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.1e-19 100.5 128 43.8
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.1e-19 100.5 234 32.9
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 3.7e-19 99.8 148 42.6
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-18 98.2 106 53.8
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.4e-18 97.8 217 37.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.4e-18 97.8 251 31.9
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 3.1e-18 96.7 75 58.7
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.9e-18 95.5 191 38.2
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 9.0e-18 95.1 187 32.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.5e-17 94.4 150 40.0
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.0e-17 94.0 72 61.1
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.0e-17 94.0 150 40.0
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.4e-17 93.2 79 59.5
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.4e-17 93.2 79 59.5
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.4e-17 93.2 232 32.3
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 5.8e-17 92.4 121 45.5
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.0e-16 91.7 134 46.3
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-16 91.3 175 40.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-16 91.3 159 40.3
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.7e-16 90.9 86 54.7
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.2e-16 90.5 180 38.3
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.9e-16 89.4 176 36.4
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.5e-16 89.0 230 33.5
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 6.5e-16 89.0 140 40.0
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.4e-16 88.6 169 40.8
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.1e-15 88.2 59 66.1
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.1e-15 88.2 234 30.8
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 1.4e-15 87.8 196 38.8
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.9e-15 87.4 214 37.4
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.9e-15 87.4 236 31.4
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 7.1e-15 85.5 98 53.1
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 7.1e-15 85.5 98 53.1
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 9.3e-15 85.1 135 40.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.6e-14 84.3 132 42.4
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.1e-14 84.0 126 39.7
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.5e-14 83.2 159 35.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 3.5e-14 83.2 288 33.0
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 7.9e-14 82.0 242 33.5
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.0e-13 81.6 136 41.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.0e-13 81.6 49 71.4
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 2.3e-13 80.5 98 52.0
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.0e-13 80.1 133 38.3
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 3.9e-13 79.7 241 32.4
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 3.9e-13 79.7 100 49.0
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 1.1e-12 78.2 205 34.1
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 2.5e-12 77.0 145 39.3
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 5.7e-12 75.9 205 33.7
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.6e-11 74.3 267 29.6
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 3.7e-11 73.2 172 35.5
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.1e-10 71.6 75 54.7
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 5.3e-10 69.3 121 37.2
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 5.3e-10 69.3 191 32.5
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 9.0e-10 68.6 136 39.0
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.2e-09 68.2 90 46.7
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-09 67.8 123 38.2
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 2.0e-09 67.4 191 31.4
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 2.0e-09 67.4 191 31.4
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.0e-09 67.4 121 38.0
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 2.0e-09 67.4 48 60.4
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 2.6e-09 67.0 184 30.4
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.9e-09 65.9 130 39.2
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 7.6e-09 65.5 162 35.8
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.0e-08 65.1 73 47.9
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.3e-08 64.7 179 32.4
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.3e-08 64.7 114 36.8
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 2.9e-08 63.5 102 42.2
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 3.2e-07 60.1 98 39.8
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 4.2e-07 59.7 163 33.1
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 7.2e-07 58.9 151 33.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 9.3e-07 58.5 166 33.1
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 9.3e-07 58.5 143 35.0
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.2e-06 58.2 89 41.6
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 2.1e-06 57.4 95 34.7
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 2.7e-06 57.0 113 37.2
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 3.5e-06 56.6 65 43.1
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 3.5e-06 56.6 108 36.1
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 3.5e-06 56.6 135 36.3
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 4.6e-06 56.2 191 31.4
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 6.1e-06 55.8 191 27.7
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 6.1e-06 55.8 142 32.4
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 7.9e-06 55.5 154 29.2
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 7.9e-06 55.5 75 42.7


User provided reference genes

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