Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 1.1e-34 149.4 76 100.0
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 6.6e-32 140.2 76 94.7
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.1e-29 132.9 77 90.9
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.1e-29 132.9 77 90.9
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 1.4e-29 132.5 76 88.2
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 8.9e-29 129.8 77 89.6
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 1.9e-26 122.1 78 80.8
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 1.2e-25 119.4 76 77.6
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 2.7e-25 118.2 76 78.9
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 6.0e-25 117.1 72 77.8
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 1.7e-24 115.5 77 77.9
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 1.9e-23 112.1 78 75.6
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 1.9e-23 112.1 79 72.2
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 3.3e-23 111.3 78 73.1
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 3.3e-23 111.3 78 71.8
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 9.5e-23 109.8 76 72.4
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 1.2e-22 109.4 81 69.1
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 2.8e-22 108.2 73 74.0
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 3.6e-22 107.8 74 74.3
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 3.6e-22 107.8 81 70.4
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.6e-22 107.8 78 74.4
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 3.6e-22 107.8 76 69.7
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 6.2e-22 107.1 81 69.1
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 8.1e-22 106.7 80 71.2
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 1.4e-21 105.9 76 68.4
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 1.4e-21 105.9 77 72.7
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.4e-21 105.9 77 74.0
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 2.3e-21 105.1 80 72.5
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 4.0e-21 104.4 77 70.1
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 4.0e-21 104.4 74 68.9
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 5.2e-21 104.0 78 71.8
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 6.8e-21 103.6 76 69.7
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 6.8e-21 103.6 74 70.3
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 1.2e-20 102.8 78 71.8
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 1.5e-20 102.4 83 68.7
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 1.5e-20 102.4 78 70.5
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.5e-20 102.4 74 70.3
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 2.0e-20 102.1 77 67.5
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 2.0e-20 102.1 79 69.6
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 2.6e-20 101.7 80 68.8
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 3.4e-20 101.3 82 68.3
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 4.4e-20 100.9 74 71.6
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 5.8e-20 100.5 77 71.4
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 1.3e-19 99.4 63 76.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.3e-19 99.4 63 76.2
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.3e-19 99.4 80 67.5
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.7e-19 99.0 77 68.8
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 2.2e-19 98.6 81 65.4
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 2.9e-19 98.2 83 63.9
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 3.7e-19 97.8 77 67.5
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 4.9e-19 97.4 88 61.4
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 6.4e-19 97.1 77 64.9
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 1.1e-18 96.3 78 65.4
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.4e-18 95.9 81 66.7
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.9e-18 95.5 77 66.2
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 1.9e-18 95.5 83 68.7
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 2.4e-18 95.1 77 66.2
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 5.4e-18 94.0 77 66.2
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 9.2e-18 93.2 64 75.0
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 9.2e-18 93.2 75 62.7
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 9.2e-18 93.2 65 69.2
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.2e-17 92.8 77 66.2
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.6e-17 92.4 77 63.6
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 2.7e-17 91.7 77 63.6
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 2.7e-17 91.7 77 64.9
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 3.5e-17 91.3 74 66.2
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 3.5e-17 91.3 74 66.2
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 3.5e-17 91.3 74 66.2
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 3.5e-17 91.3 76 59.2
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 4.6e-17 90.9 79 64.6
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 6.0e-17 90.5 62 69.4
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 7.8e-17 90.1 117 47.0
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 7.8e-17 90.1 76 61.8
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 1.3e-16 89.4 75 62.7
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 1.7e-16 89.0 85 56.5
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 5.1e-16 87.4 76 61.8
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 6.6e-16 87.0 67 65.7
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 6.6e-16 87.0 77 61.0
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 8.6e-16 86.7 86 55.8
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 1.5e-15 85.9 55 72.7
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 1.9e-15 85.5 69 63.8
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 4.3e-15 84.3 57 70.2
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 5.6e-15 84.0 76 59.2
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 5.6e-15 84.0 91 56.0
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 9.5e-15 83.2 112 46.4
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 1.6e-14 82.4 62 64.5
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 8.1e-14 80.1 74 60.8
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 5.2e-13 77.4 77 54.5
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 2.6e-12 75.1 46 80.4
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.2e-09 66.2 81 54.3
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 2.7e-09 65.1 36 86.1
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 1.1e-07 59.7 37 75.7


User provided reference genes

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