Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G105500 Theobroma cacao HOM05D002925 ORTHO05D003247 0.0e+00 1442.2 722 100.0
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 8.2e-265 917.1 821 61.9
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 2.0e-263 912.5 771 65.0
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.9e-262 908.7 847 60.1
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 1.9e-261 906.0 847 60.0
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 2.8e-212 742.7 834 53.4
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 4.6e-159 565.8 500 63.6
Duzib041G0069 Durio zibethinus HOM05D002925 ORTHO05D003247 1.4e-99 368.2 268 69.8
Duzib041G0802 Durio zibethinus HOM05D002925 ORTHO05D003247 3.7e-92 343.6 231 76.2
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 3.3e-80 303.9 846 29.9
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 7.8e-74 282.7 914 29.3
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 2.5e-72 277.7 881 28.5
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 7.3e-72 276.2 804 31.7
Potri.002G097700 Populus trichocarpa HOM05D002925 ORTHO05D003247 9.5e-72 275.8 884 28.7
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 1.8e-70 271.6 893 28.2
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 4.0e-70 270.4 866 28.6
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 8.4e-60 236.1 825 28.2
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.1e-55 221.5 749 28.0
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 4.0e-54 217.2 741 29.1
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 1.1e-51 209.1 846 27.9
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 3.5e-50 204.1 601 29.6
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 2.1e-47 194.9 668 28.4
Actinidia29592 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.2e-43 181.0 832 26.9
Haze_22278 Corylus avellana HOM05D002925 ORTHO05D003247 5.5e-43 180.3 964 24.5
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 7.4e-40 169.9 717 25.4
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 2.1e-39 168.3 923 24.4
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 3.7e-39 167.5 856 23.8
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.9e-38 163.3 864 24.7
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 9.0e-38 162.9 819 24.9
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 1.5e-37 162.2 826 25.8
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 5.8e-37 160.2 966 24.1
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 7.6e-37 159.8 877 24.9
CAN.G193.33 Capsicum annuum HOM05D002925 ORTHO05D000105 6.5e-36 156.8 802 25.3
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 2.5e-35 154.8 724 23.8
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 2.1e-34 151.8 194 40.2
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.0e-33 147.9 233 38.2
MD15G1370800 Malus domestica HOM05D002925 ORTHO05D003247 8.7e-33 146.4 166 47.6
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.1e-32 146.0 233 37.3
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 3.3e-32 144.4 211 36.5
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 4.3e-32 144.1 344 33.4
RcHm_v2.0_Chr7g0243961 Rosa chinensis HOM05D002925 ORTHO05D003247 4.3e-32 144.1 344 33.4
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 7.4e-32 143.3 650 25.5
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 9.6e-32 142.9 233 36.9
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 2.1e-31 141.7 233 36.9
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 2.0e-29 135.2 824 24.4
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.0e-29 135.2 784 25.4
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 4.5e-29 134.0 195 36.4
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.0e-28 132.9 195 35.9
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 2.9e-28 131.3 775 24.4
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 8.4e-28 129.8 716 23.2
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 1.1e-27 129.4 718 22.4
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 9.3e-27 126.3 718 22.0
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.7e-26 124.8 486 27.2
Actinidia33130 Actinidia chinensis HOM05D002925 ORTHO05D003247 6.1e-26 123.6 500 26.6
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.0e-25 122.9 255 32.2
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 6.7e-25 120.2 712 22.3
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.5e-24 119.0 976 22.8
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 3.3e-24 117.9 281 28.5
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 5.7e-24 117.1 183 39.3
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 4.1e-22 110.9 191 36.6
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 4.1e-22 110.9 125 41.6
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 5.3e-22 110.5 125 42.4
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 5.3e-22 110.5 125 43.2
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.2e-21 109.4 222 30.2
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 3.4e-21 107.8 125 40.8
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 4.5e-21 107.5 125 41.6
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 5.9e-21 107.1 125 41.6
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 5.9e-21 107.1 720 23.1
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 7.7e-21 106.7 125 40.8
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.0e-20 106.3 125 40.8
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.3e-20 105.9 125 40.0
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 1.7e-20 105.5 109 45.9
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.7e-20 105.5 673 24.4
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.2e-20 105.1 152 39.5
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 2.9e-20 104.8 193 32.1
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 2.9e-20 104.8 125 40.0
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.8e-20 104.4 125 40.0
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 6.5e-20 103.6 141 39.7
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.9e-19 102.1 100 51.0
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.9e-19 102.1 137 36.5
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.5e-19 101.7 137 36.5
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.5e-19 101.7 137 36.5
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 2.5e-19 101.7 179 33.5
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.5e-19 101.7 716 21.2
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.2e-19 101.3 214 33.2
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 4.2e-19 100.9 97 43.3
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 4.2e-19 100.9 97 43.3
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 4.2e-19 100.9 125 37.6
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 7.2e-19 100.1 154 37.0
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 7.2e-19 100.1 86 48.8
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 9.4e-19 99.8 125 37.6
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 1.2e-18 99.4 97 43.3
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 1.6e-18 99.0 126 38.9
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 2.1e-18 98.6 125 37.6
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 2.1e-18 98.6 125 36.8
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 3.6e-18 97.8 125 39.2
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 4.6e-18 97.4 125 40.0
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 4.6e-18 97.4 91 45.1
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 6.1e-18 97.1 602 23.3
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 6.1e-18 97.1 108 41.7
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 7.9e-18 96.7 125 38.4
Actinidia00276 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.0e-17 96.3 200 30.0
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 1.4e-17 95.9 127 37.8
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 1.8e-17 95.5 125 37.6
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 3.0e-17 94.7 81 49.4
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 3.9e-17 94.4 165 34.5
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 5.1e-17 94.0 839 22.5
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 8.8e-17 93.2 125 36.0
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 1.5e-16 92.4 126 38.9
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 2.0e-16 92.0 97 42.3
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.5e-16 91.7 99 39.4
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 2.5e-16 91.7 712 22.8
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 5.7e-16 90.5 237 28.3
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 7.4e-16 90.1 112 40.2
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 9.7e-16 89.7 107 35.5
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 1.3e-15 89.4 391 25.1
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.2e-15 88.6 101 39.6
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.8e-15 87.4 125 36.0
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.8e-15 87.4 125 36.0
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.1e-14 86.3 316 25.6
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.4e-14 85.1 185 29.7
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 1.2e-13 82.8 78 47.4
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 2.6e-13 81.6 194 28.9
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 3.4e-13 81.3 200 29.0
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 3.4e-13 81.3 111 36.0
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 1.0e-12 79.7 87 42.5
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 1.0e-12 79.7 87 42.5
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 1.3e-12 79.3 78 44.9
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 1.7e-12 79.0 82 41.5
SHI39627 Sapria himalayana HOM05D002925 ORTHO05D003247 2.2e-12 78.6 72 47.2
Sc18g0006800 Simmondsia chinensis HOM05D002925 ORTHO05D003247 5.0e-12 77.4 95 37.9
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 2.5e-11 75.1 135 32.6
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 1.6e-10 72.4 148 27.7
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 2.1e-10 72.0 194 27.8
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 2.1e-10 72.0 173 30.1
PSO210G6104 Papaver somniferum HOM05D002925 ORTHO05D003247 2.1e-10 72.0 74 44.6
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 3.6e-10 71.2 178 27.5
EL10Ac9g21492 Beta vulgaris HOM05D002925 ORTHO05D003247 1.8e-09 68.9 117 29.1
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 2.3e-09 68.6 175 28.6
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 2.6e-08 65.1 97 37.1
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 4.4e-08 64.3 83 33.7
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 4.4e-08 64.3 109 30.3
RcHm_v2.0_Chr6g0271781 Rosa chinensis HOM05D002925 ORTHO05D003247 5.7e-08 63.9 101 34.7
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 5.7e-08 63.9 284 27.5
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 9.7e-08 63.2 721 19.0
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 2.2e-07 62.0 823 20.8
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 8.2e-07 60.1 94 30.9
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 5.3e-06 57.4 84 34.5
PSO210G0747 Papaver somniferum HOM05D002925 ORTHO05D003247 9.1e-06 56.6 112 32.1


User provided reference genes

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