Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 6.5e-166 587.4 319 100.0
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 4.2e-96 355.5 292 69.5
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 9.3e-96 354.4 292 69.5
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.0e-95 351.7 292 68.5
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 1.3e-89 334.0 307 67.4
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.6e-79 300.4 290 63.1
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 2.7e-79 299.7 290 62.4
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 2.8e-60 236.5 306 51.3
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 3.7e-60 236.1 212 66.0
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.8e-59 233.8 213 66.2
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 2.4e-59 233.4 306 51.6
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 5.3e-59 232.3 309 51.8
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.6e-58 230.7 306 51.0
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 3.8e-57 226.1 290 51.7
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 1.9e-56 223.8 300 54.3
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 3.2e-56 223.0 299 52.2
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 2.1e-55 220.3 309 49.5
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 3.4e-53 213.0 313 47.6
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 9.8e-53 211.5 299 47.8
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 3.7e-52 209.5 278 54.0
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 1.1e-51 208.0 309 46.9
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 5.9e-50 202.2 306 47.7
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 5.0e-49 199.1 306 48.4
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 1.5e-48 197.6 262 50.8
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 4.2e-48 196.1 137 80.3
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 4.7e-47 192.6 312 43.9
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 6.1e-47 192.2 314 44.3
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 4.0e-46 189.5 309 46.3
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 3.4e-45 186.4 257 47.1
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 7.5e-45 185.3 269 46.5
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 1.7e-44 184.1 294 43.9
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.2e-44 183.7 289 49.5
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 2.2e-44 183.7 258 53.9
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 2.8e-44 183.3 302 47.7
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 2.8e-44 183.3 262 49.6
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 8.3e-44 181.8 313 45.0
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 8.3e-44 181.8 313 45.0
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 1.4e-43 181.0 313 41.5
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.8e-43 180.6 313 45.0
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 1.8e-43 180.6 169 62.7
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 9.2e-43 178.3 306 43.8
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 2.7e-42 176.8 239 48.1
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 1.7e-41 174.1 339 40.7
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 2.3e-41 173.7 311 41.8
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 3.8e-41 172.9 316 41.8
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 6.6e-41 172.2 319 42.6
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 3.3e-40 169.9 296 44.9
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 3.3e-40 169.9 296 42.9
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 5.6e-40 169.1 335 40.3
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 9.5e-40 168.3 304 42.4
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 4.7e-39 166.0 353 41.9
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 6.1e-39 165.6 283 42.0
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 1.0e-38 164.9 296 42.2
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 1.0e-38 164.9 293 42.3
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 2.3e-38 163.7 310 39.0
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 3.0e-38 163.3 316 41.8
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 3.0e-38 163.3 316 41.8
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 3.0e-38 163.3 316 41.8
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 4.0e-38 162.9 309 43.4
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 4.0e-38 162.9 295 42.0
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 4.0e-38 162.9 291 41.2
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 5.2e-38 162.5 298 44.0
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 1.5e-37 161.0 271 46.9
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 2.6e-37 160.2 340 40.3
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 3.4e-37 159.8 170 57.1
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 4.4e-37 159.5 263 44.1
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 4.4e-37 159.5 326 39.0
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 5.7e-37 159.1 310 41.9
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 5.7e-37 159.1 171 56.7
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 7.5e-37 158.7 328 41.2
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 1.3e-36 157.9 296 42.6
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 1.7e-36 157.5 291 40.9
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 4.9e-36 156.0 255 45.5
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 4.9e-36 156.0 297 41.1
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 1.1e-35 154.8 322 37.3
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.1e-35 154.8 262 47.3
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 2.4e-35 153.7 338 40.8
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 4.1e-35 152.9 299 39.1
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 1.2e-34 151.4 247 45.3
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 1.6e-34 151.0 326 43.6
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 2.7e-34 150.2 170 55.3
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 4.6e-34 149.4 295 46.4
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 7.8e-34 148.7 150 59.3
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 5.0e-33 146.0 306 40.8
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 8.6e-33 145.2 184 49.5
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 1.5e-32 144.4 345 40.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.9e-32 144.1 155 57.4
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 2.1e-31 140.6 228 51.3
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 6.2e-31 139.0 308 39.9
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 2.0e-29 134.0 298 35.9
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 5.8e-29 132.5 206 50.5
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 4.9e-28 129.4 264 38.6
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 1.1e-27 128.3 225 44.9
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 1.4e-27 127.9 283 37.5
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 1.9e-27 127.5 276 43.1
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 3.2e-27 126.7 280 41.4
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 5.4e-27 125.9 255 39.2
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 3.5e-26 123.2 263 38.8
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 1.0e-25 121.7 282 39.7
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 1.0e-25 121.7 216 42.6
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 2.3e-25 120.6 243 41.2
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 2.5e-24 117.1 221 46.2
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 3.3e-24 116.7 254 37.0
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 1.2e-23 114.8 138 55.1
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.8e-23 113.6 96 67.7
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 6.2e-23 112.5 280 37.9
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.1e-22 111.7 273 37.0
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.4e-22 111.3 243 38.3
Duzib114G0247 Durio zibethinus HOM05D006245 ORTHO05D007260 1.8e-22 110.9 142 50.7
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 3.4e-21 106.7 228 37.7
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.4e-21 106.3 90 68.9
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 2.9e-20 103.6 313 32.9
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 3.7e-20 103.2 168 46.4
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 6.4e-20 102.4 167 44.3
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 9.2e-19 98.6 94 61.7
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 2.1e-18 97.4 225 36.9
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.0e-18 95.9 61 82.0
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 3.0e-17 93.6 85 64.7
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.2e-15 85.9 63 71.4
Gohir.A05G409466 Gossypium hirsutum HOM05D006245 ORTHO05D007260 8.9e-14 82.0 139 39.6
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.7e-10 70.5 61 62.3
Atru.chr5.2854 Acer truncatum HOM05D006245 ORTHO05D007260 3.6e-07 60.1 124 41.1
ECA234G2998 Erigeron canadensis HOM05D006245 ORTHO05D007260 6.2e-07 59.3 129 36.4
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 1.1e-06 58.5 56 57.1


User provided reference genes

Program Settings