Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 1.6e-194 682.6 343 100.0
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 8.3e-175 617.1 343 89.2
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 4.1e-174 614.8 345 89.0
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 7.0e-174 614.0 343 89.5
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.9e-172 608.6 343 88.6
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 7.8e-149 530.8 345 75.9
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 2.4e-142 509.2 344 73.5
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 9.2e-142 507.3 342 71.3
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 7.8e-141 504.2 277 90.6
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 1.3e-140 503.4 345 73.0
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 8.7e-140 500.7 344 75.6
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 4.7e-138 495.0 341 71.6
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 2.4e-137 492.7 345 73.0
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 2.1e-133 479.6 343 69.1
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.7e-133 479.2 342 68.1
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 2.7e-133 479.2 341 67.4
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 2.7e-133 479.2 344 69.2
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 1.0e-132 477.2 351 70.1
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 1.7e-132 476.5 344 68.0
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 5.1e-132 474.9 342 71.1
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 5.1e-132 474.9 342 71.9
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 1.5e-131 473.4 345 68.7
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 1.5e-131 473.4 341 68.3
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 1.3e-130 470.3 341 68.9
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 6.9e-129 464.5 343 70.0
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 2.6e-128 462.6 340 67.4
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.6e-128 462.6 344 67.2
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 4.5e-128 461.8 344 66.3
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.3e-127 460.3 340 66.8
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.2e-127 459.5 342 71.1
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 3.8e-127 458.8 343 66.2
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 8.4e-127 457.6 343 67.9
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 3.5e-125 452.2 345 67.5
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 4.6e-125 451.8 356 64.3
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 8.7e-124 447.6 277 77.3
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 1.5e-123 446.8 344 67.2
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 1.5e-123 446.8 343 66.2
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 9.6e-123 444.1 347 66.6
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 2.8e-122 442.6 346 62.1
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 8.1e-122 441.0 341 65.1
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 1.8e-121 439.9 344 66.9
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 2.6e-120 436.0 344 66.9
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 3.8e-119 432.2 343 63.8
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 8.4e-119 431.0 343 63.3
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 2.5e-118 429.5 341 63.9
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.5e-118 429.5 346 64.5
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 3.5e-117 425.6 342 64.0
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 2.3e-116 422.9 428 53.5
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.1e-113 414.1 348 62.4
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 4.0e-113 412.1 341 62.5
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 2.0e-112 409.8 341 61.6
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 1.0e-111 407.5 341 61.3
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 3.2e-110 402.5 352 62.5
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.2e-110 402.5 340 62.4
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 9.3e-110 401.0 340 61.5
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 2.1e-109 399.8 340 60.0
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 3.5e-109 399.1 335 60.3
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 7.9e-109 397.9 340 61.8
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 5.1e-108 395.2 342 60.5
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 6.7e-108 394.8 346 60.1
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 6.7e-108 394.8 340 59.7
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 8.7e-108 394.4 378 56.6
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 5.7e-107 391.7 343 58.0
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 1.3e-106 390.6 342 58.5
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.3e-106 390.6 344 60.5
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 1.6e-106 390.2 337 60.8
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 2.2e-106 389.8 339 58.7
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.8e-105 386.7 353 58.1
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 4.5e-104 382.1 353 57.2
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 7.7e-104 381.3 343 58.6
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.0e-103 380.9 346 58.1
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 5.0e-103 378.6 340 58.2
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 6.5e-103 378.3 341 60.1
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 2.0e-99 366.7 334 58.4
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 8.2e-98 361.3 335 57.6
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 1.1e-97 360.9 299 61.5
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 2.4e-97 359.8 349 54.4
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 2.4e-97 359.8 342 56.7
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 5.3e-97 358.6 343 57.4
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 2.6e-96 356.3 351 53.3
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 1.3e-95 354.0 352 55.7
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 2.5e-94 349.7 336 55.4
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 7.2e-94 348.2 274 62.0
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 7.2e-94 348.2 282 63.5
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 4.5e-88 328.9 342 53.5
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 5.9e-88 328.6 212 77.4
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 7.7e-88 328.2 336 54.2
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 7.7e-88 328.2 340 51.5
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.0e-79 301.2 346 47.1
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 4.2e-78 295.8 214 69.2
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 3.7e-66 256.1 243 56.4
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 7.3e-54 215.3 296 45.3
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 1.6e-53 214.2 323 38.1
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 2.6e-51 206.8 174 60.9
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 4.9e-50 202.6 173 56.6
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 3.1e-44 183.3 187 54.0
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 1.5e-38 164.5 290 38.3
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 3.1e-36 156.8 267 35.6
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 3.4e-35 153.3 198 46.0
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 8.3e-34 148.7 327 31.8
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.6e-32 144.4 167 47.9
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 4.3e-30 136.3 132 55.3
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 4.7e-29 132.9 93 69.9
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.0e-27 127.5 170 39.4
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 2.6e-27 127.1 128 51.6
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 8.4e-26 122.1 147 47.6
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 8.4e-26 122.1 126 56.3
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 2.7e-24 117.1 110 55.5
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 1.1e-20 105.1 116 52.6
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 3.5e-16 90.1 87 44.8
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 5.6e-14 82.8 100 48.0
Nn5g30604 Nelumbo nucifera HOM05D006958 ORTHO05D008814 6.4e-10 69.3 74 51.4
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 1.3e-07 61.6 67 50.7
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 2.3e-07 60.8 37 70.3
HPP92_009560 Vanilla planifolia HOM05D001084 ORTHO05D001275 1.1e-06 58.5 52 57.7


User provided reference genes

Program Settings