Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 3.1e-278 961.1 459 100.0
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 7.3e-227 790.4 445 84.3
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 1.8e-217 759.2 460 79.3
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 2.6e-216 755.4 460 79.3
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 5.8e-216 754.2 460 78.9
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 1.7e-159 566.6 467 61.5
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 2.3e-156 556.2 466 60.1
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 1.5e-155 553.5 470 60.0
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 2.6e-155 552.7 468 60.3
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 3.4e-155 552.4 466 59.9
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.3e-154 550.4 468 60.0
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 4.8e-154 548.5 469 59.1
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.4e-153 546.2 452 59.7
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 4.1e-153 545.4 466 59.0
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.4e-153 545.0 452 59.5
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 2.7e-152 542.7 469 58.6
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.7e-151 540.0 463 59.0
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 8.5e-151 537.7 468 58.1
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 1.1e-150 537.3 457 59.5
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 2.5e-150 536.2 464 59.7
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 3.2e-150 535.8 469 56.9
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.1e-149 533.1 463 59.0
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 2.3e-148 529.6 464 58.2
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.7e-146 522.3 466 58.2
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 7.0e-145 518.1 458 57.2
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 7.0e-145 518.1 461 57.3
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 9.2e-145 517.7 456 57.0
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 2.0e-144 516.5 456 57.0
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.0e-144 516.5 467 56.1
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 5.9e-144 515.0 464 58.2
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.3e-143 513.8 458 57.2
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.5e-142 510.4 452 56.6
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.5e-142 510.4 458 56.6
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.9e-142 510.0 454 57.3
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 7.3e-142 508.1 475 54.7
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 2.8e-141 506.1 461 56.4
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 8.0e-141 504.6 474 56.1
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 1.2e-139 500.7 453 55.4
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 5.9e-136 488.4 481 53.2
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 5.9e-136 488.4 485 53.2
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 1.3e-135 487.3 446 56.3
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 1.9e-134 483.4 470 53.6
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 3.3e-134 482.6 456 55.0
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 3.3e-134 482.6 456 54.4
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 9.5e-134 481.1 460 53.3
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 9.5e-134 481.1 474 54.2
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 2.1e-133 479.9 467 52.5
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 2.8e-133 479.6 447 55.7
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 3.6e-133 479.2 469 54.2
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 4.7e-133 478.8 452 55.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 1.0e-132 477.6 445 55.5
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 3.4e-131 472.6 467 53.7
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 1.3e-130 470.7 461 52.3
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.7e-130 470.3 469 52.9
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 2.9e-130 469.5 472 52.1
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 8.3e-130 468.0 473 51.4
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 8.3e-130 468.0 464 51.7
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 4.1e-129 465.7 469 51.6
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 7.0e-129 464.9 466 51.7
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 4.3e-126 455.7 482 52.1
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 1.8e-124 450.3 464 51.7
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 3.1e-124 449.5 466 51.1
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 1.2e-123 447.6 457 50.3
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.9e-122 443.0 447 53.5
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 3.7e-122 442.6 478 49.2
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 8.3e-122 441.4 457 51.6
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 2.4e-121 439.9 444 53.4
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 5.4e-121 438.7 443 54.0
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 7.1e-121 438.3 462 49.1
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 9.2e-121 438.0 427 52.5
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 9.2e-121 438.0 459 48.8
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 2.1e-120 436.8 448 50.4
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 1.3e-119 434.1 460 50.9
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 2.3e-119 433.3 475 49.5
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 1.9e-118 430.3 465 49.7
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 6.2e-117 425.2 446 51.6
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 8.1e-117 424.9 446 51.8
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 1.2e-115 421.0 453 49.9
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 1.5e-115 420.6 448 51.6
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 1.5e-115 420.6 448 51.6
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 1.5e-115 420.6 471 48.0
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 4.4e-115 419.1 250 77.2
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 4.9e-114 415.6 442 51.8
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 9.2e-113 411.4 444 51.1
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 3.5e-112 409.5 492 45.9
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 3.5e-112 409.5 445 51.0
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 5.1e-111 405.6 460 47.6
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.5e-110 404.1 448 49.6
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 8.1e-109 398.3 466 45.5
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 1.2e-107 394.4 448 49.1
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.9e-105 387.1 472 45.6
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 2.1e-104 383.6 313 61.3
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 3.9e-103 379.4 452 45.1
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.9e-102 377.1 445 49.0
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.3e-102 375.9 454 44.7
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 5.4e-97 359.0 416 46.4
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 5.6e-86 322.4 457 40.9
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.6e-85 320.9 454 40.5
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 6.2e-85 318.9 325 54.8
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.3e-82 311.2 366 44.5
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.0e-74 282.7 283 51.6
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 5.3e-68 262.7 322 49.4
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 2.6e-67 260.4 486 34.8
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 8.5e-66 255.4 273 49.8
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.7e-61 241.1 318 42.1
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 2.9e-50 203.8 134 71.6
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 2.9e-50 203.8 517 30.2
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 1.5e-46 191.4 239 46.4
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 3.3e-46 190.3 386 35.0
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 3.4e-38 163.7 358 30.2
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 6.5e-34 149.4 150 52.7
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.0e-31 142.1 197 39.6
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 4.9e-29 133.3 88 64.8
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 5.0e-26 123.2 429 25.6
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.3e-25 120.2 99 54.5
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 8.0e-24 115.9 117 52.1
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 5.4e-20 103.2 86 61.6
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 9.2e-20 102.4 91 60.4
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 9.2e-20 102.4 93 52.7
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 3.0e-18 97.4 106 47.2
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 5.6e-17 93.2 91 51.6
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 9.5e-17 92.4 64 62.5
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 6.2e-16 89.7 161 34.2
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 2.3e-15 87.8 245 28.6


User provided reference genes

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