Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 2.5e-206 721.8 366 100.0
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 7.1e-148 527.7 369 76.4
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 1.1e-132 477.2 367 70.6
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 5.9e-94 348.6 375 58.1
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 7.9e-91 338.2 385 56.1
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 6.7e-90 335.1 375 56.8
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 7.5e-73 278.5 377 44.8
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 8.8e-66 255.0 373 47.5
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.5e-65 254.2 373 47.2
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.5e-65 254.2 373 47.2
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 2.0e-65 253.8 380 42.1
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 4.4e-65 252.7 383 42.8
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 2.5e-60 236.9 383 41.0
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 9.5e-60 235.0 382 41.4
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 6.8e-58 228.8 374 42.2
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 2.6e-57 226.9 370 41.4
Gorai.002G136000 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.1e-55 221.5 369 44.7
Gohir.A01G123500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 7.0e-55 218.8 369 44.2
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 9.2e-55 218.4 369 41.2
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 5.6e-52 209.1 385 38.2
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 1.6e-51 207.6 374 40.9
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 7.5e-49 198.7 366 40.2
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 4.9e-48 196.1 362 39.8
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 8.3e-48 195.3 367 38.7
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 1.6e-46 191.0 390 36.2
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 3.9e-45 186.4 313 41.5
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 6.6e-45 185.7 369 37.9
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 3.3e-44 183.3 376 37.8
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 4.3e-44 183.0 384 33.9
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 1.2e-43 181.4 364 38.7
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 2.1e-43 180.6 364 37.1
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 8.0e-43 178.7 360 36.4
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 8.0e-43 178.7 367 36.2
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.1e-42 176.8 368 36.7
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.6e-41 173.7 368 36.4
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 3.4e-41 173.3 394 35.8
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 9.8e-41 171.8 361 36.8
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 1.3e-40 171.4 368 37.0
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 3.7e-40 169.9 392 37.8
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 8.3e-40 168.7 363 36.4
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 1.4e-39 167.9 373 35.9
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 1.9e-39 167.5 369 36.3
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 1.9e-39 167.5 369 36.3
Gohir.D01G111300 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.2e-38 164.9 369 37.9
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 1.6e-38 164.5 383 32.6
COL.COLO4_28465 Corchorus olitorius HOM05D006874 ORTHO05D008334 7.8e-38 162.2 213 54.0
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 1.3e-37 161.4 369 36.0
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.3e-37 160.6 350 35.1
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 3.9e-37 159.8 389 34.7
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 3.3e-36 156.8 364 33.2
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 5.6e-36 156.0 399 35.8
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 1.6e-35 154.5 358 35.5
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 4.7e-35 152.9 405 34.3
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 5.2e-34 149.4 363 36.1
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 8.9e-34 148.7 373 31.4
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 2.0e-33 147.5 364 35.7
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 9.8e-33 145.2 393 31.3
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 1.7e-32 144.4 370 34.6
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 3.7e-32 143.3 384 33.6
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 4.9e-32 142.9 363 35.8
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 1.9e-31 141.0 361 34.1
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 1.9e-31 141.0 364 31.0
Lj1g0014879 Lotus japonicus HOM05D006874 ORTHO05D008334 4.1e-31 139.8 360 35.3
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 4.6e-30 136.3 381 29.7
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 7.8e-30 135.6 373 32.2
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 1.7e-29 134.4 367 35.4
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 1.5e-28 131.3 358 33.2
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 1.5e-28 131.3 380 29.5
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 3.6e-27 126.7 360 31.4
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 4.7e-27 126.3 361 30.2
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 1.4e-26 124.8 371 30.7
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.4e-26 124.8 360 30.0
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 2.3e-26 124.0 394 30.5
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 3.1e-26 123.6 362 29.8
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 8.9e-26 122.1 394 31.2
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 4.4e-25 119.8 264 34.5
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 7.6e-25 119.0 359 33.4
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 9.9e-25 118.6 373 33.5
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 9.9e-25 118.6 350 29.4
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 1.7e-24 117.9 362 31.2
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 2.9e-24 117.1 362 30.7
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 2.4e-23 114.0 362 30.9
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 1.6e-22 111.3 144 41.7
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 2.1e-22 110.9 366 30.6
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 7.8e-22 109.0 349 29.8
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 1.3e-21 108.2 198 36.9
TPR.G13116 Trifolium pratense HOM05D006874 ORTHO05D008334 2.3e-21 107.5 362 28.7
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 3.0e-21 107.1 349 28.7
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 3.9e-21 106.7 371 28.3
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 6.6e-21 105.9 349 29.8
Medtr1g017530 Medicago truncatula HOM05D006874 ORTHO05D008334 6.6e-21 105.9 367 28.1
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 3.6e-19 100.1 195 34.9
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 4.7e-19 99.8 366 26.0
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 4.7e-19 99.8 149 43.0
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 1.4e-18 98.2 369 27.9
Phvul.001G029700 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 2.4e-18 97.4 380 28.2
Phvul.009G073900 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 3.1e-18 97.1 388 29.4
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 5.2e-18 96.3 382 28.3
FAN24G0724 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.6e-17 94.0 190 34.2
Psat6g017400 Pisum sativum HOM05D006874 ORTHO05D008334 5.8e-17 92.8 367 27.0
Lj5g0027457 Lotus japonicus HOM05D006874 ORTHO05D008334 3.8e-16 90.1 371 27.5
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 4.9e-16 89.7 364 28.8
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 2.4e-15 87.4 214 32.7
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 4.2e-15 86.7 117 40.2
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 7.1e-15 85.9 193 31.6
Sopen04g031160 Solanum pennellii HOM05D006874 ORTHO05D008334 3.5e-14 83.6 285 28.4
VMungo0647G0698 Vigna mungo HOM05D006874 ORTHO05D008334 1.0e-13 82.0 380 26.8
arahy.Tifrunner.gnm1.ann1.0IC8QA Arachis hypogaea HOM05D006874 ORTHO05D008334 1.7e-13 81.3 333 30.3
DCAR_020062 Daucus carota HOM05D006874 ORTHO05D008334 5.1e-13 79.7 356 28.9
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 1.5e-12 78.2 295 27.8
RhsimUnG0041100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.5e-12 78.2 358 25.1
RhsimUnG0123100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.5e-12 78.2 358 25.1
SGA_v2.0_scaffold14G07085 Striga asiatica HOM05D000285 ORTHO05D000241 2.4e-10 70.9 115 36.5
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 3.4e-09 67.0 358 20.7
TAR625G0319 Trochodendron aralioides HOM05D006874 ORTHO05D008334 1.4e-07 61.6 108 39.8
CDE02G2198 Ceratophyllum demersum HOM05D006874 ORTHO05D008334 3.2e-07 60.5 362 25.1
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 4.2e-07 60.1 371 22.6
HPP92_019577 Vanilla planifolia HOM05D025517 ORTHO05D019338 7.9e-06 55.8 353 24.4


User provided reference genes

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