Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 2.0e-62 242.3 122 100.0
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 4.6e-43 177.9 121 75.2
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 7.8e-43 177.2 122 76.2
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.3e-42 176.4 122 74.6
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 3.0e-42 175.3 120 75.0
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 5.1e-42 174.5 122 74.6
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 1.1e-36 156.8 114 71.1
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.6e-35 152.9 128 67.2
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 5.6e-25 117.9 107 58.9
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 3.6e-24 115.2 126 55.6
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 6.2e-24 114.4 108 57.4
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.8e-23 112.8 109 58.7
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 2.4e-23 112.5 123 54.5
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 5.3e-23 111.3 103 59.2
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 5.3e-23 111.3 108 54.6
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 9.0e-23 110.5 59 81.4
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.5e-22 109.8 102 60.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 1.5e-22 109.8 80 66.2
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 2.0e-22 109.4 78 69.2
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 2.6e-22 109.0 96 61.5
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.4e-22 108.6 59 84.7
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 3.4e-22 108.6 110 55.5
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 7.6e-22 107.5 65 80.0
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 9.9e-22 107.1 94 58.5
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 1.7e-21 106.3 53 88.7
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 1.7e-21 106.3 100 55.0
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 2.9e-21 105.5 76 64.5
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 2.9e-21 105.5 82 65.9
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 6.4e-21 104.4 97 53.6
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 6.4e-21 104.4 98 55.1
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 8.4e-21 104.0 97 54.6
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-20 103.6 98 51.0
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.1e-20 103.6 82 67.1
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.1e-20 103.6 53 84.9
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.4e-20 103.2 101 52.5
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.4e-20 103.2 97 53.6
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.4e-20 103.2 97 52.6
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 1.4e-20 103.2 57 84.2
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 1.9e-20 102.8 101 56.4
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 1.9e-20 102.8 101 56.4
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 1.9e-20 102.8 99 55.6
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 3.2e-20 102.1 119 51.3
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 4.2e-20 101.7 79 59.5
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 4.2e-20 101.7 58 75.9
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 5.4e-20 101.3 84 59.5
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 5.4e-20 101.3 81 58.0
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 7.1e-20 100.9 53 84.9
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 9.3e-20 100.5 81 58.0
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 1.2e-19 100.1 94 51.1
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.2e-19 100.1 94 50.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 1.6e-19 99.8 89 61.8
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.6e-19 99.8 85 60.0
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.6e-19 99.8 85 57.6
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 1.6e-19 99.8 57 77.2
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.6e-19 99.8 97 54.6
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 2.1e-19 99.4 84 56.0
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 2.7e-19 99.0 107 51.4
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 3.5e-19 98.6 66 69.7
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 4.6e-19 98.2 77 66.2
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 4.6e-19 98.2 65 75.4
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 6.0e-19 97.8 99 53.5
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 6.0e-19 97.8 98 54.1
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 6.0e-19 97.8 98 54.1
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 6.0e-19 97.8 55 80.0
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 7.9e-19 97.4 60 71.7
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 7.9e-19 97.4 60 73.3
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 7.9e-19 97.4 71 69.0
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 1.0e-18 97.1 81 56.8
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 1.0e-18 97.1 49 83.7
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.3e-18 96.7 98 53.1
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.7e-18 96.3 63 71.4
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.7e-18 96.3 87 56.3
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.7e-18 96.3 75 68.0
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 3.0e-18 95.5 97 49.5
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 3.9e-18 95.1 56 78.6
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 3.9e-18 95.1 119 51.3
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 5.1e-18 94.7 86 55.8
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 6.6e-18 94.4 48 83.3
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 6.6e-18 94.4 88 53.4
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 1.1e-17 93.6 55 76.4
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 1.5e-17 93.2 63 73.0
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 1.5e-17 93.2 63 73.0
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.9e-17 92.8 72 68.1
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 3.3e-17 92.0 94 51.1
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 9.6e-17 90.5 81 59.3
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 1.3e-16 90.1 103 47.6
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 1.6e-16 89.7 52 75.0
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 4.8e-16 88.2 54 74.1
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 4.8e-16 88.2 55 74.5
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 4.8e-16 88.2 55 74.5
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.1e-15 87.0 72 55.6
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.1e-15 87.0 72 55.6
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 1.4e-15 86.7 70 55.7
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 5.3e-15 84.7 52 76.9
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 6.9e-15 84.3 52 71.2
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 9.0e-15 84.0 52 69.2
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 1.5e-14 83.2 52 69.2
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.4e-14 82.0 55 67.3
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 9.9e-14 80.5 81 51.9
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 9.9e-14 80.5 81 51.9
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 9.9e-14 80.5 108 49.1
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.1e-12 77.0 56 67.9
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 3.2e-12 75.5 56 66.1
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 4.2e-12 75.1 79 50.6
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 9.3e-12 73.9 42 83.3
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 9.3e-12 73.9 64 59.4
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 3.0e-10 68.9 53 60.4
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 2.8e-08 62.4 41 63.4
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 4.0e-07 58.5 112 36.6
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.2e-06 57.0 72 45.8
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 2.0e-06 56.2 72 48.6
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 2.6e-06 55.8 50 58.0


User provided reference genes

Program Settings