Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G079300 Theobroma cacao HOM05D000828 ORTHO05D000623 6.4e-123 444.1 227 100.0
Gohir.A05G215100 Gossypium hirsutum HOM05D000828 ORTHO05D000623 8.5e-35 151.4 218 46.3
Gohir.D05G218400 Gossypium hirsutum HOM05D000828 ORTHO05D000623 3.6e-33 146.0 218 45.4
Gorai.009G225400 Gossypium raimondii HOM05D000828 ORTHO05D000623 3.6e-33 146.0 218 45.4
COL.COLO4_35349 Corchorus olitorius HOM05D000828 ORTHO05D000623 8.0e-33 144.8 225 44.0
Dinv10613 Davidia involucrata HOM05D000828 ORTHO05D000623 3.3e-18 96.3 217 33.6
MD11G1040000 Malus domestica HOM05D000828 ORTHO05D000623 6.1e-17 92.0 212 33.5
Lj4C80T3 Lonicera japonica HOM05D000828 ORTHO05D000623 1.0e-16 91.3 215 33.0
TWI36G1300 Tripterygium wilfordii HOM05D000828 ORTHO05D000623 3.4e-15 86.3 213 30.5
TAR633G1101 Trochodendron aralioides HOM05D000828 ORTHO05D000623 1.7e-14 84.0 213 32.4
Manes.18G054150 Manihot esculenta HOM05D000828 ORTHO05D000623 4.9e-14 82.4 209 28.2
Prupe.1G542200 Prunus persica HOM05D000828 ORTHO05D000623 4.9e-14 82.4 217 30.9
Nn1g01237 Nelumbo nucifera HOM05D000828 ORTHO05D000623 1.1e-13 81.3 225 31.6
Lsat_1_v5_gn_9_35200 Lactuca sativa HOM05D000828 ORTHO05D000623 1.4e-13 80.9 212 33.0
Eucgr.F00466 Eucalyptus grandis HOM05D000828 ORTHO05D000623 2.4e-13 80.1 222 29.3
Actinidia29091 Actinidia chinensis HOM05D000828 ORTHO05D000623 7.0e-13 78.6 197 32.0
Lsat_1_v5_gn_9_35220 Lactuca sativa HOM05D000828 ORTHO05D000623 1.6e-12 77.4 207 30.0
COL.COLO4_14513 Corchorus olitorius HOM05D000828 ORTHO05D000623 2.7e-12 76.6 139 37.4
Nitab4.5_0002020g0050 Nicotiana tabacum HOM05D000828 ORTHO05D000623 3.5e-12 76.3 192 29.7
DCAR_024013 Daucus carota HOM05D000828 ORTHO05D000623 4.6e-12 75.9 208 28.8
Dinv01495 Davidia involucrata HOM05D000828 ORTHO05D000623 7.8e-12 75.1 182 38.5
Psat3g127200 Pisum sativum HOM05D000828 ORTHO05D000623 7.8e-12 75.1 219 28.3
Gorai.012G115200 Gossypium raimondii HOM05D000828 ORTHO05D000623 1.0e-11 74.7 132 34.8
Sed0008926 Sechium edule HOM05D000828 ORTHO05D000623 1.0e-11 74.7 163 34.4
arahy.Tifrunner.gnm1.ann1.BC7D9W Arachis hypogaea HOM05D000828 ORTHO05D000623 1.7e-11 73.9 215 28.4
Gohir.D04G131300 Gossypium hirsutum HOM05D000828 ORTHO05D000623 2.3e-11 73.6 132 34.8
Lalb_Chr11g0064741 Lupinus albus HOM05D000828 ORTHO05D000623 2.3e-11 73.6 211 29.9
Ciclev10012620m.g Citrus clementina HOM05D000828 ORTHO05D000623 3.0e-11 73.2 217 30.0
Gohir.A04G092100 Gossypium hirsutum HOM05D000828 ORTHO05D000623 3.9e-11 72.8 132 34.8
Lsat_1_v5_gn_6_107880 Lactuca sativa HOM05D000828 ORTHO05D000623 5.0e-11 72.4 75 48.0
ClCG08G011950 Citrullus lanatus HOM05D000828 ORTHO05D000623 6.6e-11 72.0 216 29.6
Sc15g0005190 Simmondsia chinensis HOM05D000828 ORTHO05D000623 8.6e-11 71.6 217 27.6
CANSAT35G1227 Cannabis sativa HOM05D000828 ORTHO05D000623 1.1e-10 71.2 211 27.5
Peaxi162Scf00170g00122 Petunia axillaris HOM05D000828 ORTHO05D000623 1.1e-10 71.2 191 31.4
PGSC0003DMG400011102 Solanum tuberosum HOM05D000828 ORTHO05D000623 1.1e-10 71.2 140 34.3
FAN05G4803 Fragaria x ananassa HOM05D003017 ORTHO05D003388 1.9e-10 70.5 138 38.4
Peaxi162Scf00170g00008 Petunia axillaris HOM05D000828 ORTHO05D000623 2.5e-10 70.1 208 29.3
MELO3C009152.2 Cucumis melo HOM05D000828 ORTHO05D000623 3.3e-10 69.7 204 30.4
SalBow2G3470 Salvia bowleyana HOM05D000828 ORTHO05D000623 3.3e-10 69.7 209 27.8
Aqoxy4G02526 Aquilegia oxysepala HOM05D000828 ORTHO05D000623 4.3e-10 69.3 68 50.0
HanXRQChr15g0464061 Helianthus annuus HOM05D000828 ORTHO05D000623 4.3e-10 69.3 214 29.0
DCAR_028859 Daucus carota HOM05D000828 ORTHO05D000623 5.6e-10 68.9 205 26.8
Eucgr.K02977 Eucalyptus grandis HOM05D000828 ORTHO05D000623 5.6e-10 68.9 137 32.8
MD04G1155800 Malus domestica HOM05D000828 ORTHO05D000623 5.6e-10 68.9 213 28.6
Atru.chr8.2263 Acer truncatum HOM05D000828 ORTHO05D000623 7.3e-10 68.6 215 27.0
FAN09G0086 Fragaria x ananassa HOM05D000828 ORTHO05D000623 7.3e-10 68.6 133 36.1
FAN09G1603 Fragaria x ananassa HOM05D000828 ORTHO05D000623 7.3e-10 68.6 133 36.1
Lalb_Chr19g0124611 Lupinus albus HOM05D000828 ORTHO05D000623 7.3e-10 68.6 138 31.9
Manes.08G093300 Manihot esculenta HOM05D000828 ORTHO05D000623 7.3e-10 68.6 209 29.7
FvH4_6g11270 Fragaria vesca HOM05D000828 ORTHO05D000623 9.5e-10 68.2 133 35.3
FAN14G0600 Fragaria x ananassa HOM05D000828 ORTHO05D000623 9.5e-10 68.2 133 35.3
Haze_21020 Corylus avellana HOM05D000828 ORTHO05D000623 1.2e-09 67.8 207 28.0
VMungo1309G2534 Vigna mungo HOM05D000828 ORTHO05D000623 1.2e-09 67.8 72 44.4
Cfa017191 Carpinus fangiana HOM05D000828 ORTHO05D000623 1.6e-09 67.4 208 28.8
CiPaw.10G157300 Carya illinoinensis HOM05D000828 ORTHO05D000623 1.6e-09 67.4 217 29.5
Hma1.2p1_0362F.1_g136400 Hydrangea macrophylla HOM05D000828 ORTHO05D000623 1.6e-09 67.4 223 27.8
Lj1g0006880 Lotus japonicus HOM05D000828 ORTHO05D000623 1.6e-09 67.4 131 33.6
Peaxi162Scf00170g00121 Petunia axillaris HOM05D000828 ORTHO05D000623 1.6e-09 67.4 216 27.8
TPR.G8415 Trifolium pratense HOM05D000828 ORTHO05D000623 1.6e-09 67.4 142 28.9
Ca_26614_v3 Cicer arietinum L. HOM05D000828 ORTHO05D000623 2.1e-09 67.0 128 31.2
Duzib106G0024 Durio zibethinus HOM05D000828 ORTHO05D000623 2.1e-09 67.0 130 34.6
Lalb_Chr01g0023021 Lupinus albus HOM05D000828 ORTHO05D000623 2.1e-09 67.0 218 28.4
PSO782G4874 Papaver somniferum HOM05D000828 ORTHO05D000623 2.1e-09 67.0 128 33.6
PSO339G0646 Papaver somniferum HOM05D000828 ORTHO05D000623 3.6e-09 66.2 143 30.1
Phvul.008G097900 Phaseolus vulgaris HOM05D000828 ORTHO05D000623 3.6e-09 66.2 144 31.9
RcHm_v2.0_Chr3g0462811 Rosa chinensis HOM05D000828 ORTHO05D000623 3.6e-09 66.2 133 35.3
VMungo1383G2197 Vigna mungo HOM05D000828 ORTHO05D000623 3.6e-09 66.2 80 48.8
Solyc10g085210.2 Solanum lycopersicum HOM05D000828 ORTHO05D000623 4.7e-09 65.9 131 32.8
Thecc.05G013800 Theobroma cacao HOM05D000828 ORTHO05D000623 4.7e-09 65.9 134 35.8
Cpa.g.sc11.99 Carica papaya HOM05D000828 ORTHO05D000623 6.2e-09 65.5 132 31.1
Oeu054389.1 Olea europaea HOM05D000828 ORTHO05D000623 6.2e-09 65.5 67 44.8
Prupe.6G279300 Prunus persica HOM05D000828 ORTHO05D000623 6.2e-09 65.5 219 29.7
CAN.G133.9 Capsicum annuum HOM05D000828 ORTHO05D000623 1.0e-08 64.7 208 26.4
Ciclev10003662m.g Citrus clementina HOM05D000828 ORTHO05D000623 1.0e-08 64.7 68 45.6
MELO3C011116.2 Cucumis melo HOM05D000828 ORTHO05D000623 1.0e-08 64.7 136 31.6
MD12G1170000 Malus domestica HOM05D000828 ORTHO05D000623 1.0e-08 64.7 142 31.7
PSO384G4235 Papaver somniferum HOM05D000828 ORTHO05D000623 1.0e-08 64.7 79 40.5
CsaV3_3G033620 Cucumis sativus L. HOM05D000828 ORTHO05D000623 1.4e-08 64.3 207 28.5
Lsat_1_v5_gn_2_124540 Lactuca sativa HOM05D000828 ORTHO05D000623 1.4e-08 64.3 210 27.6
PSO384G4507 Papaver somniferum HOM05D000828 ORTHO05D000623 1.4e-08 64.3 214 26.6
Peaxi162Scf00009g01526 Petunia axillaris HOM05D000828 ORTHO05D000623 1.8e-08 63.9 145 32.4
BcaC05g24825 Brassica carinata HOM05D000828 ORTHO05D000623 2.3e-08 63.5 212 29.7
QL07p035225 Quercus lobata HOM05D000828 ORTHO05D000623 2.3e-08 63.5 211 25.6
Sopen10g034680 Solanum pennellii HOM05D000828 ORTHO05D000623 2.3e-08 63.5 131 32.8
Nitab4.5_0000377g0110 Nicotiana tabacum HOM05D000828 ORTHO05D000623 3.1e-08 63.2 211 26.1
Thhalv10008665m.g Eutrema salsugineum HOM05D000828 ORTHO05D000623 4.0e-08 62.8 216 29.2
FAN02G1375 Fragaria x ananassa HOM05D003017 ORTHO05D003388 4.0e-08 62.8 131 35.9
Glyma.07G151600 Glycine max HOM05D000828 ORTHO05D000623 4.0e-08 62.8 80 42.5
PSO339G4861 Papaver somniferum HOM05D000828 ORTHO05D000623 4.0e-08 62.8 68 45.6
Sp1g08610 Schrenkiella parvula HOM05D000828 ORTHO05D000623 4.0e-08 62.8 214 29.4
PGSC0003DMG400004453 Solanum tuberosum HOM05D000828 ORTHO05D000623 4.0e-08 62.8 208 29.3
Aqoxy6G02454 Aquilegia oxysepala HOM05D000828 ORTHO05D000623 5.2e-08 62.4 209 29.2
AT1G58330 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 5.2e-08 62.4 212 28.8
A06p06650 Brassica napus HOM05D000828 ORTHO05D000623 5.2e-08 62.4 212 30.2
BraA06t23879Z Brassica rapa HOM05D000828 ORTHO05D000623 5.2e-08 62.4 212 30.2
FAN14G2316 Fragaria x ananassa HOM05D003017 ORTHO05D003388 5.2e-08 62.4 130 33.8
PGSC0003DMG400004967 Solanum tuberosum HOM05D000828 ORTHO05D000623 5.2e-08 62.4 221 25.3
TWI74G0856 Tripterygium wilfordii HOM05D000828 ORTHO05D000623 5.2e-08 62.4 205 26.3
Glyma.18G202900 Glycine max HOM05D000828 ORTHO05D000623 6.8e-08 62.0 81 44.4
Nitab4.5_0000797g0150 Nicotiana tabacum HOM05D000828 ORTHO05D000623 6.8e-08 62.0 174 31.0
ClCG10G022260 Citrullus lanatus HOM05D000828 ORTHO05D000623 1.2e-07 61.2 204 28.4
Nitab4.5_0000496g0170 Nicotiana tabacum HOM05D000828 ORTHO05D000623 1.2e-07 61.2 78 42.3
PGR083G0051 Punica granatum HOM05D000828 ORTHO05D000623 1.2e-07 61.2 212 27.4
Solyc09g005610.4 Solanum lycopersicum HOM05D000828 ORTHO05D000623 1.2e-07 61.2 208 27.9
CARHR010070 Cardamine hirsuta HOM05D000828 ORTHO05D000623 1.5e-07 60.8 219 28.8
FAN08G2671 Fragaria x ananassa HOM05D048325 ORTHO05D000623 1.5e-07 60.8 72 37.5
Nitab4.5_0004107g0060 Nicotiana tabacum HOM05D000828 ORTHO05D000623 1.5e-07 60.8 205 28.8
PSO339G4904 Papaver somniferum HOM05D000828 ORTHO05D000623 1.5e-07 60.8 212 27.4
BcaC05g24826 Brassica carinata HOM05D000828 ORTHO05D000623 2.0e-07 60.5 136 33.1
CAN.G243.11 Capsicum annuum HOM05D000828 ORTHO05D000623 2.0e-07 60.5 135 32.6
ECA247G1555 Erigeron canadensis HOM05D000828 ORTHO05D000623 2.0e-07 60.5 214 27.1
Nitab4.5_0010209g0020 Nicotiana tabacum HOM05D000828 ORTHO05D000623 2.6e-07 60.1 78 41.0
PSO478G1021 Papaver somniferum HOM05D000828 ORTHO05D000623 2.6e-07 60.1 71 43.7
Migut.N02825 Erythranthe guttata HOM05D000828 ORTHO05D000623 4.4e-07 59.3 209 27.3
C05p08060 Brassica napus HOM05D000828 ORTHO05D000623 5.8e-07 58.9 136 31.6
BolC5t29559H Brassica oleracea HOM05D000828 ORTHO05D000623 5.8e-07 58.9 136 31.6
Carub.0001s0935 Capsella rubella HOM05D000828 ORTHO05D000623 5.8e-07 58.9 219 28.8
AL2G17890 Arabidopsis lyrata HOM05D000828 ORTHO05D000623 7.5e-07 58.5 211 28.4
Medtr7g068860 Medicago truncatula HOM05D000828 ORTHO05D000623 7.5e-07 58.5 128 28.1
C08p49200 Brassica napus HOM05D000828 ORTHO05D000623 9.8e-07 58.2 139 32.4
BolC8t52455H Brassica oleracea HOM05D000828 ORTHO05D000623 9.8e-07 58.2 139 32.4
BraA09t41870Z Brassica rapa HOM05D000828 ORTHO05D000623 1.3e-06 57.8 138 32.6
Ca_17612_v3 Cicer arietinum L. HOM05D000828 ORTHO05D000623 1.3e-06 57.8 68 42.6
Peaxi162Scf00170g00129 Petunia axillaris HOM05D000828 ORTHO05D000623 1.3e-06 57.8 183 29.0
Sed0016092 Sechium edule HOM05D000828 ORTHO05D000623 1.3e-06 57.8 211 27.0
Aqoxy1G03794 Aquilegia oxysepala HOM05D000828 ORTHO05D000623 1.7e-06 57.4 176 28.4
Cc06_g01190 Coffea canephora HOM05D000828 ORTHO05D000623 1.7e-06 57.4 158 31.0
Lsat_1_v5_gn_6_107860 Lactuca sativa HOM05D000828 ORTHO05D000623 2.2e-06 57.0 133 30.8
Peaxi162Scf00284g01040 Petunia axillaris HOM05D000828 ORTHO05D000623 2.2e-06 57.0 203 25.1
Psat7g043720 Pisum sativum HOM05D000828 ORTHO05D000623 2.2e-06 57.0 69 39.1
AL1G20580 Arabidopsis lyrata HOM05D000828 ORTHO05D000623 3.7e-06 56.2 214 29.0
ECA246G0755 Erigeron canadensis HOM05D000828 ORTHO05D000623 3.7e-06 56.2 213 25.8
Medtr8g094690 Medicago truncatula HOM05D000828 ORTHO05D000623 3.7e-06 56.2 75 37.3
TPR.G13202 Trifolium pratense HOM05D000828 ORTHO05D000623 3.7e-06 56.2 65 38.5
AT1G09950 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 4.9e-06 55.8 214 28.0
Atru.chr4.1104 Acer truncatum HOM05D000828 ORTHO05D000623 6.4e-06 55.5 101 31.7
Ah.05g166790 Amaranthus hybridus HOM05D000828 ORTHO05D000623 6.4e-06 55.5 131 30.5
BcaC07g41852 Brassica carinata HOM05D000828 ORTHO05D000623 6.4e-06 55.5 139 31.7
CDE06G1709 Ceratophyllum demersum HOM05D000055 ORTHO05D000057 6.4e-06 55.5 128 28.1
Nitab4.5_0005748g0010 Nicotiana tabacum HOM05D000828 ORTHO05D000623 6.4e-06 55.5 214 23.8
TPR.G28497 Trifolium pratense HOM05D000828 ORTHO05D000623 8.3e-06 55.1 69 37.7


User provided reference genes

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