Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 5.8e-30 133.7 71 100.0
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 5.6e-17 90.5 71 69.0
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.2e-16 89.4 69 69.6
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 1.6e-16 89.0 69 69.6
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 2.3e-15 85.1 69 66.7
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 3.1e-15 84.7 70 64.3
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 8.9e-15 83.2 64 70.3
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.2e-14 82.8 70 61.4
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 3.4e-14 81.3 71 63.4
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 5.8e-14 80.5 63 63.5
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 7.5e-14 80.1 66 65.2
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 9.9e-14 79.7 66 62.1
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 3.7e-13 77.8 69 63.8
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 4.9e-13 77.4 68 61.8
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 8.3e-13 76.6 71 60.6
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 8.3e-13 76.6 69 60.9
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 8.3e-13 76.6 69 60.9
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.1e-12 76.3 69 62.3
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 2.4e-12 75.1 66 62.1
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 2.4e-12 75.1 71 62.0
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 2.4e-12 75.1 65 63.1
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 2.4e-12 75.1 71 59.2
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 5.4e-12 73.9 69 58.0
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 5.4e-12 73.9 69 56.5
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 5.4e-12 73.9 71 60.6
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 7.1e-12 73.6 69 58.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 7.1e-12 73.6 65 60.0
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 9.2e-12 73.2 71 60.6
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 9.2e-12 73.2 70 57.1
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.6e-11 72.4 68 54.4
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 2.1e-11 72.0 69 55.1
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 2.1e-11 72.0 69 55.1
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 2.7e-11 71.6 67 56.7
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 2.7e-11 71.6 65 60.0
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 2.7e-11 71.6 69 55.1
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 3.5e-11 71.2 69 55.1
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 3.5e-11 71.2 66 60.6
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 4.6e-11 70.9 69 56.5
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.6e-11 70.9 69 55.1
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 4.6e-11 70.9 69 53.6
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 4.6e-11 70.9 65 60.0
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 6.0e-11 70.5 67 55.2
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 6.0e-11 70.5 69 53.6
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 6.0e-11 70.5 66 59.1
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.0e-11 70.5 66 59.1
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 6.0e-11 70.5 69 56.5
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 7.8e-11 70.1 69 50.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 7.8e-11 70.1 66 56.1
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.3e-10 69.3 67 55.2
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 1.7e-10 68.9 65 58.5
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 2.3e-10 68.6 69 50.7
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 2.3e-10 68.6 70 54.3
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 3.0e-10 68.2 71 52.1
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 3.0e-10 68.2 65 58.5
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 5.1e-10 67.4 67 55.2
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.1e-09 66.2 65 56.9
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.5e-09 65.9 71 52.1
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.3e-09 64.7 70 52.9
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.2e-08 62.8 67 53.7
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.6e-08 62.4 68 50.0
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 2.1e-08 62.0 69 49.3
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 2.1e-08 62.0 65 52.3
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.8e-08 61.6 57 57.9
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.6e-08 61.2 68 51.5
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 3.6e-08 61.2 65 50.8
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 4.7e-08 60.8 64 53.1
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 6.2e-08 60.5 68 48.5
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 8.1e-08 60.1 68 51.5
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-07 59.7 100 42.0
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-07 59.7 100 42.0
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.1e-07 59.7 69 50.7
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.8e-07 58.9 56 57.1
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 3.1e-07 58.2 64 46.9
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 3.1e-07 58.2 67 47.8
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 6.8e-07 57.0 69 43.5
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 2.0e-06 55.5 63 49.2
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 2.0e-06 55.5 44 65.9
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 3.4e-06 54.7 69 43.5
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 5.8e-06 53.9 66 50.0


User provided reference genes

Program Settings