Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G062100 Theobroma cacao HOM05D006218 ORTHO05D007338 8.7e-214 747.3 563 100.0
Duzib041G0398 Durio zibethinus HOM05D006218 ORTHO05D007338 6.5e-169 598.2 566 77.0
Duzib093G0304 Durio zibethinus HOM05D006218 ORTHO05D007338 1.5e-165 587.0 566 81.1
Gohir.D05G181600 Gossypium hirsutum HOM05D006218 ORTHO05D007338 2.8e-159 566.2 567 74.6
Gorai.009G186600 Gossypium raimondii HOM05D006218 ORTHO05D007338 1.7e-156 557.0 567 73.9
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 2.7e-130 469.9 568 54.8
QL02p015030 Quercus lobata HOM05D006218 ORTHO05D007338 1.5e-128 464.2 566 67.3
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 2.4e-126 456.8 557 66.2
Dinv31962 Davidia involucrata HOM05D006218 ORTHO05D007338 8.9e-126 454.9 552 66.3
GSVIVG01013390001 Vitis vinifera HOM05D006218 ORTHO05D007338 2.8e-119 433.3 520 65.2
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 3.4e-117 426.4 552 59.6
CSS0036772 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 4.4e-117 426.0 550 64.7
Prupe.5G009500 Prunus persica HOM05D006218 ORTHO05D007338 4.4e-117 426.0 565 71.9
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 5.8e-117 425.6 566 60.6
Ciclev10000757m.g Citrus clementina HOM05D006218 ORTHO05D007338 1.3e-116 424.5 550 65.3
CSS0043525 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 3.8e-116 422.9 550 64.4
MD16G1284000 Malus domestica HOM05D006218 ORTHO05D007338 3.0e-113 413.3 565 70.1
Medtr2g100200 Medicago truncatula HOM05D006218 ORTHO05D007338 8.1e-111 405.2 517 43.3
PGR083G1452 Punica granatum HOM05D006218 ORTHO05D007338 1.8e-110 404.1 536 67.0
Gohir.A05G178200 Gossypium hirsutum HOM05D006218 ORTHO05D007338 4.9e-108 396.0 567 62.6
CANSAT80G1826 Cannabis sativa HOM05D006218 ORTHO05D007338 4.3e-104 382.9 564 67.6
EL10Ac4g09913 Beta vulgaris HOM05D006218 ORTHO05D007338 4.0e-102 376.3 562 57.8
Thhalv10003177m.g Eutrema salsugineum HOM05D006218 ORTHO05D007338 6.9e-102 375.6 512 47.7
Ah.04g161150 Amaranthus hybridus HOM05D006218 ORTHO05D007338 1.2e-101 374.8 549 58.5
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 2.0e-101 374.0 470 51.5
MELO3C017038.2 Cucumis melo HOM05D006218 ORTHO05D007338 5.8e-101 372.5 550 53.5
Cc00_g16990 Coffea canephora HOM05D006218 ORTHO05D007338 1.3e-100 371.3 557 59.8
CsaV3_4G037400 Cucumis sativus L. HOM05D006218 ORTHO05D007338 2.2e-100 370.5 550 52.9
ClCG11G018820 Citrullus lanatus HOM05D006218 ORTHO05D007338 1.6e-95 354.4 562 55.7
Sed0014170 Sechium edule HOM05D006218 ORTHO05D007338 6.5e-92 342.4 571 56.4
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 4.2e-91 339.7 537 41.2
Sc16g0011970 Simmondsia chinensis HOM05D006218 ORTHO05D007338 1.5e-88 331.3 540 57.0
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 9.7e-88 328.6 516 64.0
SHI24507 Sapria himalayana HOM05D006218 ORTHO05D007338 1.3e-87 328.2 519 47.6
FvH4_5g25350 Fragaria vesca HOM05D006218 ORTHO05D007338 4.1e-86 323.2 541 56.6
Rhsim10G0062900 Rhododendron simsii HOM05D006218 ORTHO05D007338 1.5e-85 321.2 424 49.1
Sopen02g018380 Solanum pennellii HOM05D006218 ORTHO05D007338 2.0e-85 320.9 549 61.9
AUR62000761 Chenopodium quinoa HOM05D006218 ORTHO05D007338 7.7e-85 318.9 524 57.4
HPP92_001390 Vanilla planifolia HOM05D006218 ORTHO05D007338 6.5e-84 315.8 506 46.0
PGSC0003DMG400021154 Solanum tuberosum HOM05D006218 ORTHO05D007338 2.0e-80 304.3 550 63.5
Cfa014110 Carpinus fangiana HOM05D006218 ORTHO05D007338 5.3e-78 296.2 569 56.9
DCAR_006421 Daucus carota HOM05D006218 ORTHO05D007338 7.7e-77 292.4 604 49.2
AUR62005208 Chenopodium quinoa HOM05D006218 ORTHO05D007338 1.1e-75 288.5 465 58.1
SGA_v2.0_scaffold21G09648 Striga asiatica HOM05D006218 ORTHO05D007338 3.0e-73 280.4 520 55.0
Rhsim10G0063100 Rhododendron simsii HOM05D006218 ORTHO05D007338 3.9e-73 280.0 552 54.7
FAN18G0123 Fragaria x ananassa HOM05D006218 ORTHO05D007338 3.3e-72 276.9 454 58.6
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 1.7e-71 274.6 551 34.3
SalBow6G0752 Salvia bowleyana HOM05D006218 ORTHO05D007338 9.1e-70 268.9 515 33.4
Migut.O00315 Erythranthe guttata HOM05D006218 ORTHO05D007338 4.5e-69 266.5 539 52.7
FAN08G0845 Fragaria x ananassa HOM05D006218 ORTHO05D007338 2.7e-66 257.3 497 56.9
Aa31LG9G12480 Aethionema arabicum HOM05D006218 ORTHO05D007338 2.0e-64 251.1 523 50.7
Aqoxy6G01612 Aquilegia oxysepala HOM05D006218 ORTHO05D007338 4.4e-64 250.0 573 49.2
Actinidia37914 Actinidia chinensis HOM05D006218 ORTHO05D007338 1.3e-63 248.4 520 55.2
RcHm_v2.0_Chr6g0271871 Rosa chinensis HOM05D006218 ORTHO05D007338 1.1e-62 245.4 146 79.5
FvH4_5g24880 Fragaria vesca HOM05D006218 ORTHO05D007338 4.1e-62 243.4 401 44.6
Rhsim10G0066100 Rhododendron simsii HOM05D006218 ORTHO05D007338 7.0e-62 242.7 150 76.7
RcHm_v2.0_Chr6g0271981 Rosa chinensis HOM05D006218 ORTHO05D007338 1.2e-61 241.9 540 52.0
Manes.01G131700 Manihot esculenta HOM05D006218 ORTHO05D007338 3.5e-61 240.4 567 55.0
RcHm_v2.0_Chr7g0215761 Rosa chinensis HOM05D006218 ORTHO05D007338 5.9e-61 239.6 150 76.0
TPR.G6568 Trifolium pratense HOM05D006218 ORTHO05D007338 2.9e-60 237.3 150 74.0
AL8G16360 Arabidopsis lyrata HOM05D006218 ORTHO05D007338 8.5e-60 235.7 528 50.9
MSTRG.24922 Avicennia marina HOM05D006218 ORTHO05D007338 9.4e-59 232.3 556 50.0
TAR625G0531 Trochodendron aralioides HOM05D006218 ORTHO05D007338 6.1e-58 229.6 309 44.0
arahy.Tifrunner.gnm1.ann1.9489MQ Arachis hypogaea HOM05D006218 ORTHO05D007338 2.6e-56 224.2 535 51.0
Carub.0008s0482 Capsella rubella HOM05D006218 ORTHO05D007338 4.4e-56 223.4 512 51.2
vmacro04416 Vaccinium macrocarpon HOM05D006218 ORTHO05D007338 2.8e-55 220.7 296 44.6
Cpa.g.sc428.8 Carica papaya HOM05D006218 ORTHO05D007338 8.3e-55 219.2 262 50.8
Nn5g30994 Nelumbo nucifera HOM05D006218 ORTHO05D007338 1.8e-54 218.0 309 42.4
Potri.005G247200 Populus trichocarpa HOM05D006218 ORTHO05D007338 5.4e-54 216.5 538 50.4
A06p47680 Brassica napus HOM05D006218 ORTHO05D007338 1.2e-53 215.3 512 50.6
CDE02G2496 Ceratophyllum demersum HOM05D006218 ORTHO05D007338 2.9e-52 210.7 530 45.5
Lj1g0005723 Lotus japonicus HOM05D006218 ORTHO05D007338 6.5e-52 209.5 259 44.4
RcHm_v2.0_Chr7g0215771 Rosa chinensis HOM05D006218 ORTHO05D007338 6.5e-52 209.5 310 41.6
Sabra05G0191200 Salix brachista HOM05D006218 ORTHO05D007338 6.5e-52 209.5 547 50.1
RcHm_v2.0_Chr6g0271861 Rosa chinensis HOM05D006218 ORTHO05D007338 4.2e-51 206.8 310 41.3
BraA06t27636Z Brassica rapa HOM05D006218 ORTHO05D007338 5.5e-51 206.5 508 50.2
BcaC06g31676 Brassica carinata HOM05D006218 ORTHO05D007338 4.7e-50 203.4 513 48.3
VMungo1080G0052 Vigna mungo HOM05D006218 ORTHO05D007338 5.2e-49 199.9 505 48.7
Psat5g293680 Pisum sativum HOM05D006218 ORTHO05D007338 1.5e-48 198.4 515 36.3
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.5e-48 198.4 262 41.2
Lalb_Chr03g0040821 Lupinus albus HOM05D006218 ORTHO05D007338 3.4e-48 197.2 528 47.3
BcaC06g34625 Brassica carinata HOM05D006218 ORTHO05D007338 7.5e-48 196.1 528 48.5
BolC7t43164H Brassica oleracea HOM05D006218 ORTHO05D007338 1.3e-47 195.3 524 48.9
VMungo0251G2195 Vigna mungo HOM05D006218 ORTHO05D007338 2.8e-47 194.1 503 47.9
C07p26360 Brassica napus HOM05D006218 ORTHO05D007338 2.4e-46 191.0 270 41.5
Nitab4.5_0003027g0060 Nicotiana tabacum HOM05D006218 ORTHO05D007338 3.1e-46 190.7 291 41.2
THA.LOC104801948 Tarenaya hassleriana HOM05D006218 ORTHO05D007338 5.4e-46 189.9 557 46.5
AT5G43820 Arabidopsis thaliana HOM05D006218 ORTHO05D007338 5.9e-45 186.4 254 40.9
Phvul.002G162200 Phaseolus vulgaris HOM05D006218 ORTHO05D007338 1.3e-44 185.3 263 39.9
CARHR179660 Cardamine hirsuta HOM05D006218 ORTHO05D007338 8.6e-44 182.6 514 47.5
Cfa013418 Carpinus fangiana HOM05D000602 ORTHO05D007338 1.2e-42 178.7 361 33.8
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 4.7e-42 176.8 118 66.1
Eucgr.F01783 Eucalyptus grandis HOM05D006218 ORTHO05D007338 1.4e-41 175.3 572 45.6
Haze_21910 Corylus avellana HOM05D000602 ORTHO05D002639 4.0e-41 173.7 149 59.7
unitig_46.g18024 Utricularia gibba HOM05D006218 ORTHO05D007338 4.0e-41 173.7 517 34.0
Nitab4.5_0004275g0030 Nicotiana tabacum HOM05D006218 ORTHO05D007338 1.7e-39 168.3 292 52.7
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 1.8e-38 164.9 536 46.5
Rhsim10G0065400 Rhododendron simsii HOM05D006218 ORTHO05D007338 1.8e-38 164.9 251 40.6
FvH4_5g25520 Fragaria vesca HOM05D006218 ORTHO05D007338 3.9e-36 157.1 95 77.9
HanXRQChr14g0446721 Helianthus annuus HOM05D006218 ORTHO05D007338 5.6e-35 153.3 100 67.0
FAN08G1989 Fragaria x ananassa HOM05D006218 ORTHO05D007338 9.5e-35 152.5 88 79.5
Oeu013581.1 Olea europaea HOM05D006218 ORTHO05D007338 9.5e-35 152.5 294 71.1
HanXRQChr10g0293751 Helianthus annuus HOM05D006218 ORTHO05D007338 1.6e-34 151.8 295 32.5
THA.LOC104801950 Tarenaya hassleriana HOM05D006218 ORTHO05D007338 1.8e-33 148.3 199 45.2
COL.COLO4_19322 Corchorus olitorius HOM05D006218 ORTHO05D007338 6.8e-33 146.4 566 26.9
RcHm_v2.0_Chr7g0219831 Rosa chinensis HOM05D006218 ORTHO05D007338 4.4e-32 143.7 140 54.3
HanXRQChr03g0064651 Helianthus annuus HOM05D006218 ORTHO05D007338 7.8e-29 132.9 85 70.6
ATR0807G041 Amborella trichopoda HOM05D006218 ORTHO05D007338 5.0e-28 130.2 414 50.2
Rhsim07G0256800 Rhododendron simsii HOM05D006218 ORTHO05D007338 6.6e-28 129.8 201 39.8
HPP92_028229 Vanilla planifolia HOM05D006218 ORTHO05D007338 4.0e-25 120.6 92 62.0
RcHm_v2.0_Chr7g0217231 Rosa chinensis HOM05D006218 ORTHO05D007338 7.8e-21 106.3 292 54.1
HanXRQChr15g0480181 Helianthus annuus HOM05D017474 ORTHO05D011180 1.0e-20 105.9 69 68.1
RcHm_v2.0_Chr7g0215901 Rosa chinensis HOM05D006218 ORTHO05D007338 1.1e-19 102.4 102 52.9
SEGI_33548 Sequoiadendron giganteum HOM05D006218 ORTHO05D007338 1.5e-19 102.1 468 43.4
Lsat_1_v5_gn_9_33960 Lactuca sativa HOM05D006218 ORTHO05D007338 1.2e-18 99.0 98 55.1
Os02g0304800 Oryza sativa ssp. japonica HOM05D006218 ORTHO05D007338 6.2e-18 96.7 222 29.7
HPP92_001391 Vanilla planifolia HOM05D006218 ORTHO05D007338 2.6e-16 91.3 124 38.7
FAN08G1712 Fragaria x ananassa HOM05D006218 ORTHO05D007338 5.8e-16 90.1 98 50.0
HPP92_012639 Vanilla planifolia HOM05D006218 ORTHO05D007338 5.8e-16 90.1 121 38.8
FAN08G1583 Fragaria x ananassa HOM05D006218 ORTHO05D007338 1.3e-15 89.0 146 34.2
Hma1.2p1_0612F.1_g188870 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 4.9e-15 87.0 68 58.8
Zm00001eb135240 Zea mays HOM05D006218 ORTHO05D007338 1.9e-14 85.1 212 27.8
Glyma.15G113600 Glycine max HOM05D006218 ORTHO05D007338 5.4e-14 83.6 51 72.5
Lj4P809T22 Lonicera japonica HOM05D006218 ORTHO05D007338 2.1e-13 81.6 143 36.4
Cfa014108 Carpinus fangiana HOM05D000011 ORTHO05D002639 1.1e-11 75.9 140 38.6
FAN04G3064 Fragaria x ananassa HOM05D006218 ORTHO05D007338 1.5e-11 75.5 191 82.7
Lj4E809T0 Lonicera japonica HOM05D006218 ORTHO05D007338 8.9e-09 66.2 105 41.9
Atru.chr2.2410 Acer truncatum HOM05D000424 ORTHO05D000355 2.6e-08 64.7 186 23.1
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 2.6e-08 64.7 102 32.4
Oeu014607.1 Olea europaea HOM05D007173 ORTHO05D009151 4.4e-08 63.9 117 30.8
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 5.8e-08 63.5 102 33.3
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 7.6e-08 63.2 102 33.3
Sed0008418 Sechium edule HOM05D007173 ORTHO05D009151 1.3e-07 62.4 115 31.3
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 1.3e-07 62.4 102 33.3
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 1.7e-07 62.0 102 32.4
Nitab4.5_0000923g0180 Nicotiana tabacum HOM05D007173 ORTHO05D009151 8.4e-07 59.7 102 30.4
CiPaw.03G118400 Carya illinoinensis HOM05D007173 ORTHO05D009151 1.4e-06 58.9 115 28.7
QL10p041753 Quercus lobata HOM05D007173 ORTHO05D009151 1.4e-06 58.9 115 28.7
BcaC06g35432 Brassica carinata HOM05D007173 ORTHO05D009151 3.2e-06 57.8 113 28.3
C07p16260 Brassica napus HOM05D007173 ORTHO05D009151 3.2e-06 57.8 113 28.3
BolC7t42120H Brassica oleracea HOM05D007173 ORTHO05D009151 3.2e-06 57.8 113 28.3
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 4.2e-06 57.4 207 23.2
arahy.Tifrunner.gnm1.ann1.51T3ZK Arachis hypogaea HOM05D007173 ORTHO05D009151 5.4e-06 57.0 115 28.7
arahy.Tifrunner.gnm1.ann1.5SK0BH Arachis hypogaea HOM05D007173 ORTHO05D009151 5.4e-06 57.0 115 28.7
Cc02_g29420 Coffea canephora HOM05D007173 ORTHO05D009151 5.4e-06 57.0 116 27.6
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 5.4e-06 57.0 116 27.6
Migut.M00780 Erythranthe guttata HOM05D000424 ORTHO05D000355 5.4e-06 57.0 116 31.9
Lj5g0007824 Lotus japonicus HOM05D000424 ORTHO05D000355 5.4e-06 57.0 137 29.2
Medtr3g008430 Medicago truncatula HOM05D007173 ORTHO05D009151 5.4e-06 57.0 102 30.4
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 5.4e-06 57.0 102 30.4
Ca_11091_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 7.1e-06 56.6 179 21.2
SalBow7G3017 Salvia bowleyana HOM05D007173 ORTHO05D009151 7.1e-06 56.6 103 30.1
Thecc.02G279200 Theobroma cacao HOM05D000424 ORTHO05D000355 7.1e-06 56.6 175 28.6
TPR.G10977 Trifolium pratense HOM05D007173 ORTHO05D009151 7.1e-06 56.6 102 30.4
CsaV3_4G030520 Cucumis sativus L. HOM05D007173 ORTHO05D009151 9.3e-06 56.2 115 30.4
Nn6g33908 Nelumbo nucifera HOM05D007173 ORTHO05D009151 9.3e-06 56.2 116 26.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 9.3e-06 56.2 115 27.8


User provided reference genes

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