Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 0.0e+00 1303.9 712 100.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.4e-189 667.2 789 55.8
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.9e-165 587.0 779 49.9
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 8.0e-164 581.6 779 49.9
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.2e-153 547.0 814 47.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 9.8e-146 521.5 624 54.0
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 4.3e-93 346.7 994 33.1
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.8e-92 344.0 774 38.4
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.5e-90 338.2 780 36.5
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.0e-90 337.8 761 37.3
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.6e-90 337.4 765 37.1
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.7e-87 327.4 810 36.9
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 8.8e-86 322.4 774 37.7
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 9.1e-83 312.4 777 35.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 5.5e-80 303.1 479 44.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.6e-77 294.3 703 37.1
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 7.4e-77 292.7 739 36.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 9.1e-75 285.8 810 35.4
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.1e-71 274.6 837 33.3
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.0e-70 272.3 720 35.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 5.2e-70 270.0 443 43.6
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 5.3e-67 260.0 637 35.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.2e-66 258.8 806 32.4
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 8.5e-65 252.7 751 33.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 9.4e-64 249.2 800 31.8
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.4e-62 245.4 382 46.1
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.0e-62 243.8 675 33.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 6.8e-62 243.0 732 32.4
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.5e-61 241.9 591 37.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 4.4e-61 240.4 773 32.7
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 2.2e-60 238.0 768 31.2
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.4e-59 234.6 818 33.0
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.7e-57 228.4 414 39.4
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.7e-57 228.4 743 32.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.7e-57 228.4 654 34.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.2e-56 224.2 767 31.6
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.4e-56 222.6 629 35.1
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 3.6e-55 220.7 761 31.7
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.6e-55 220.7 619 33.1
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.2e-53 215.7 804 31.0
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.4e-53 213.8 451 39.9
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.3e-52 212.2 685 31.8
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-51 209.1 393 44.5
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-51 209.1 452 39.2
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.4e-51 208.8 397 36.8
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.4e-51 208.0 630 31.1
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 3.1e-51 207.6 737 29.6
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.1e-51 207.6 440 39.5
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 9.1e-51 206.1 555 34.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 9.1e-51 206.1 721 31.1
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 3.5e-50 204.1 763 31.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.5e-50 203.8 617 31.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.7e-49 201.8 576 33.7
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-49 201.8 415 36.9
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.9e-49 201.1 748 30.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 8.0e-47 193.0 428 35.0
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.0e-46 192.6 766 29.8
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.8e-46 191.8 635 30.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 3.4e-45 187.6 596 29.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.2e-44 184.9 723 31.1
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.7e-42 177.9 751 28.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 3.5e-42 177.6 436 36.5
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.5e-42 177.6 441 34.0
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.0e-41 176.0 306 40.5
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.9e-41 174.5 588 31.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.0e-41 173.7 245 45.7
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.6e-41 173.3 500 32.4
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.1e-40 172.6 519 32.9
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-40 172.2 763 29.0
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 9.5e-40 169.5 460 34.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.0e-39 166.4 252 42.5
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 5.2e-38 163.7 739 28.4
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.6e-37 161.4 283 41.0
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.4e-37 161.0 390 36.2
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 4.4e-37 160.6 748 28.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.3e-36 159.1 272 39.7
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-36 158.7 617 29.0
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.2e-36 158.3 568 28.2
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.9e-36 157.1 307 37.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 4.9e-36 157.1 593 33.7
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 4.6e-34 150.6 657 28.5
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.9e-32 145.2 137 56.2
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.5e-32 144.8 164 51.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 7.3e-32 143.3 284 38.4
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 7.3e-32 143.3 312 34.9
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 9.5e-32 142.9 263 38.4
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.2e-31 142.5 767 28.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.6e-31 142.1 310 37.7
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.8e-31 141.4 303 37.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 6.2e-31 140.2 631 29.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 6.2e-31 140.2 278 37.1
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 6.2e-31 140.2 553 29.8
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 8.1e-31 139.8 284 33.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.8e-30 138.7 281 36.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.8e-30 138.7 645 27.1
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 1.8e-30 138.7 155 58.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.0e-30 137.5 500 29.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.0e-30 137.5 301 38.2
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.0e-30 137.5 305 36.7
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 5.2e-30 137.1 468 31.0
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 8.9e-30 136.3 467 31.3
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 8.9e-30 136.3 777 25.4
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.5e-29 135.6 638 28.4
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.0e-29 135.2 276 36.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 4.4e-29 134.0 537 28.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 4.4e-29 134.0 513 30.6
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 5.8e-29 133.7 276 35.5
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 5.8e-29 133.7 276 35.5
Thecc.07G171300 Theobroma cacao HOM05D003739 ORTHO05D045175 7.5e-29 133.3 143 55.2
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.9e-28 130.6 298 36.9
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 4.9e-28 130.6 298 36.9
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.1e-27 129.4 249 37.8
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 4.1e-27 127.5 269 35.3
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-26 125.2 240 39.6
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 2.3e-25 121.7 558 30.6
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 3.9e-25 120.9 264 33.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.5e-24 119.0 242 35.1
Duzib213G0243 Durio zibethinus HOM05D003739 ORTHO05D045175 2.5e-24 118.2 81 74.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.5e-24 118.2 180 41.7
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.5e-24 118.2 197 42.6
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.3e-24 117.9 225 40.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 9.5e-24 116.3 172 39.0
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.2e-23 115.9 349 32.1
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-23 115.2 264 33.7
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 4.7e-23 114.0 189 38.1
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 8.1e-23 113.2 260 34.6
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-22 112.1 448 28.8
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.8e-22 112.1 553 27.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.1e-22 111.3 270 32.2
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 3.1e-22 111.3 642 27.7
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.2e-21 109.4 161 42.9
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.2e-21 109.4 106 48.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 4.4e-21 107.5 764 25.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 4.4e-21 107.5 265 31.3
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.9e-20 104.8 258 30.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.2e-18 99.4 298 29.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.6e-18 99.0 505 28.7
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-18 97.1 187 33.7
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 6.0e-18 97.1 211 38.9
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.9e-16 92.0 151 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.9e-16 92.0 151 39.7
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 5.6e-16 90.5 301 31.6
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.2e-15 89.4 247 28.7
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 6.2e-15 87.0 292 29.1
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 8.1e-15 86.7 62 61.3
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.1e-14 86.3 159 32.1
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 3.1e-14 84.7 119 37.0
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.6e-13 81.6 407 30.5
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.8e-13 80.5 151 37.7
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.3e-12 79.3 153 32.7
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 3.8e-12 77.8 56 69.6
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.4e-11 75.9 128 35.2
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 4.2e-11 74.3 132 34.8
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.9e-08 65.5 53 58.5
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-08 65.5 126 38.9
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 1.6e-07 62.4 223 32.7
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 2.1e-07 62.0 87 42.5
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.8e-07 61.6 189 29.6
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-06 59.7 130 43.1
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.1e-06 58.2 116 31.9
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 6.9e-06 57.0 53 54.7


User provided reference genes

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