Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 4.8e-252 874.0 434 100.0
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 4.5e-226 787.7 432 90.0
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.1e-222 774.2 434 87.8
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 6.7e-222 773.9 434 87.8
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.9e-221 772.3 434 87.6
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 3.7e-220 768.1 434 88.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-212 741.9 434 85.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 2.7e-199 698.7 432 79.2
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 8.0e-199 697.2 414 81.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.4e-195 685.6 423 80.1
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 7.0e-195 684.1 420 80.2
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 7.7e-194 680.6 424 79.5
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.0e-193 680.2 412 80.8
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 4.2e-192 674.9 420 78.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.5e-192 674.5 423 78.7
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.7e-191 672.2 431 77.7
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 6.1e-191 671.0 433 77.8
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 8.0e-191 670.6 427 77.8
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.8e-190 667.5 426 76.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 4.4e-189 664.8 423 77.1
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.7e-188 662.9 435 75.9
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.2e-188 662.5 440 76.6
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 6.3e-188 661.0 424 76.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 6.3e-188 661.0 415 78.8
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 8.3e-188 660.6 433 76.9
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 1.4e-187 659.8 432 75.5
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.4e-187 659.8 428 76.2
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 4.1e-187 658.3 432 76.2
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.6e-186 656.4 424 75.7
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 2.0e-186 656.0 424 75.7
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.5e-186 655.2 428 75.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 4.5e-186 654.8 428 74.8
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.7e-185 652.9 423 75.9
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.3e-185 652.5 424 75.7
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.9e-184 649.4 429 76.0
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 9.5e-184 647.1 430 76.5
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.8e-183 645.6 430 74.2
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 8.0e-183 644.0 441 73.7
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.4e-182 643.3 430 74.2
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.8e-182 642.9 389 79.2
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.8e-182 642.9 438 73.3
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 2.3e-182 642.5 426 74.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 3.0e-182 642.1 434 73.0
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 4.0e-182 641.7 397 78.6
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 4.0e-182 641.7 429 75.5
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 5.2e-182 641.3 423 74.9
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 8.9e-182 640.6 413 75.8
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 8.9e-182 640.6 413 75.8
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 2.6e-181 639.0 436 74.5
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 4.4e-181 638.3 429 73.0
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 5.7e-181 637.9 400 77.0
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 5.7e-181 637.9 400 77.0
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 7.5e-181 637.5 400 77.0
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 9.8e-181 637.1 410 74.6
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.3e-180 636.7 400 77.0
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.7e-180 635.2 428 74.1
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.4e-179 632.5 411 74.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 5.4e-179 631.3 426 73.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 9.2e-179 630.6 422 73.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.3e-177 626.7 414 72.9
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 6.6e-177 624.4 398 76.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 8.6e-177 624.0 441 70.5
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.5e-176 623.2 410 74.4
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 4.3e-176 621.7 430 71.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 5.6e-176 621.3 437 73.0
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 5.6e-176 621.3 434 72.8
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 9.5e-176 620.5 427 72.6
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.8e-175 619.0 408 73.8
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 4.7e-175 618.2 429 71.8
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 6.1e-175 617.8 437 72.8
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 8.0e-175 617.5 410 74.4
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.8e-174 616.3 432 71.8
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.2e-172 609.4 420 72.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 6.4e-172 607.8 461 67.2
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 8.3e-172 607.4 404 73.3
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.1e-171 607.1 440 69.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 9.2e-171 604.0 421 71.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.6e-170 603.2 396 74.7
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.0e-170 602.8 416 71.9
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 6.0e-170 601.3 439 68.8
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 6.0e-170 601.3 416 71.9
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.0e-169 599.0 388 74.7
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.1e-167 592.8 393 75.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.1e-166 590.5 417 67.4
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 6.8e-166 587.8 476 64.1
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.5e-165 586.6 435 66.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.5e-165 586.6 456 66.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 5.8e-165 584.7 416 69.7
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.3e-164 583.6 390 71.5
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.1e-163 578.6 423 69.5
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.3e-161 573.5 407 67.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.1e-160 570.5 415 67.5
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.9e-158 560.8 338 78.4
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.3e-156 557.0 358 76.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 6.4e-156 554.7 402 68.2
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.5e-152 543.5 383 69.2
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.5e-149 533.5 335 77.3
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 3.8e-148 528.9 400 65.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 4.2e-147 525.4 422 62.6
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.3e-145 519.6 432 63.2
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 6.6e-145 518.1 282 88.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.5e-144 516.9 347 72.0
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 3.3e-144 515.8 371 66.0
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.6e-143 513.5 343 72.6
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.6e-143 512.3 347 71.2
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.2e-141 507.3 347 70.9
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 4.2e-139 498.8 415 60.5
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.5e-138 495.7 302 78.8
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 4.6e-138 495.4 412 60.2
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 6.0e-138 495.0 389 61.4
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.5e-136 490.3 336 71.4
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.9e-136 490.0 426 59.9
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 7.3e-136 488.0 383 63.4
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.2e-132 476.5 412 58.0
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.8e-118 430.3 278 77.7
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.7e-112 408.7 281 72.6
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.9e-107 393.7 335 57.6
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.5e-104 383.3 319 57.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.8e-95 352.4 412 44.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.8e-94 350.5 277 61.7
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 7.7e-93 345.1 208 75.0
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.0e-81 308.1 208 72.6
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 2.2e-76 290.4 204 69.6
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 2.5e-75 287.0 333 44.1
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.3e-71 274.6 173 77.5
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-69 268.1 230 61.7
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.7e-68 264.2 242 52.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.6e-66 257.7 201 61.7
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.5e-59 233.8 145 77.9
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 3.0e-52 210.3 144 72.9
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-43 180.6 115 69.6
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.7e-42 176.4 117 61.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 3.7e-39 166.8 141 53.2
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 1.6e-37 161.4 150 58.7
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.3e-35 153.3 122 63.9
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 3.1e-33 147.1 156 55.1
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 8.4e-31 139.0 388 28.6
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 4.2e-30 136.7 84 72.6
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.2e-29 135.2 297 34.0
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 3.1e-25 120.6 94 67.0
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 4.3e-19 100.1 63 68.3
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 8.4e-15 85.9 58 69.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 5.5e-14 83.2 51 72.5
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.1e-10 69.3 54 59.3
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 5.3e-09 66.6 63 49.2
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 5.3e-09 66.6 63 49.2


User provided reference genes

Program Settings