Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 1.6e-255 885.6 436 100.0
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 8.5e-209 730.3 424 82.8
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 8.5e-209 730.3 435 82.5
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.5e-189 666.4 436 76.8
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.7e-188 661.8 436 76.1
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 1.3e-185 653.3 455 71.9
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.7e-185 652.9 439 73.8
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.9e-185 651.7 436 75.7
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 8.6e-185 650.6 439 73.6
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.7e-180 635.2 433 73.0
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 2.3e-169 599.4 442 65.6
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 9.5e-168 594.0 447 65.3
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 8.1e-167 590.9 445 65.6
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 8.9e-166 587.4 435 66.4
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.5e-165 586.6 436 63.8
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 4.9e-164 581.6 439 64.9
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.9e-163 579.7 430 66.5
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 2.4e-163 579.3 436 66.3
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 1.6e-162 576.6 442 65.6
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.1e-162 576.2 426 66.0
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 3.5e-162 575.5 430 65.6
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 5.1e-161 571.6 438 61.9
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 6.6e-161 571.2 430 64.9
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 9.6e-160 567.4 437 63.8
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 1.1e-158 563.9 435 63.2
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 1.4e-158 563.5 436 61.2
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 3.4e-157 558.9 434 64.1
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 7.6e-157 557.8 420 62.6
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 1.7e-156 556.6 430 64.9
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 6.4e-156 554.7 428 60.5
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.1e-155 553.9 448 61.6
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 5.4e-155 551.6 431 62.4
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 2.1e-154 549.7 437 62.2
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 2.7e-154 549.3 416 63.5
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 4.6e-154 548.5 432 62.5
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.0e-153 547.4 432 63.2
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 1.7e-153 546.6 438 60.3
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 8.7e-153 544.3 452 60.4
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.1e-152 543.9 433 62.4
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.5e-152 543.5 435 61.4
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 1.5e-152 543.5 438 62.3
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.9e-152 543.1 430 61.2
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 2.5e-152 542.7 435 61.6
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.5e-152 542.7 437 61.6
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 2.5e-152 542.7 434 62.4
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 7.3e-152 541.2 433 61.0
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 9.6e-152 540.8 413 64.2
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.6e-151 540.0 434 61.3
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 2.1e-151 539.7 431 59.4
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 3.6e-151 538.9 431 61.5
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 3.6e-151 538.9 416 62.7
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 4.8e-151 538.5 431 59.9
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 2.4e-150 536.2 433 61.0
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.1e-150 535.8 437 60.0
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.0e-150 535.4 448 59.4
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.6e-149 532.7 404 62.9
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 2.6e-149 532.7 350 70.9
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 1.3e-148 530.4 439 58.5
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 1.3e-148 530.4 432 59.7
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 1.7e-148 530.0 439 58.3
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 3.2e-147 525.8 426 58.7
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 4.2e-147 525.4 433 59.6
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 4.2e-147 525.4 432 60.0
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 4.2e-147 525.4 353 67.4
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 5.4e-147 525.0 431 61.9
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 7.1e-147 524.6 457 58.0
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 9.3e-147 524.2 431 59.6
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 9.3e-147 524.2 427 61.6
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.2e-146 523.9 421 59.9
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 3.5e-146 522.3 408 62.7
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.0e-145 520.8 421 60.3
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 1.3e-145 520.4 436 60.8
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 3.9e-145 518.8 408 63.2
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 2.5e-144 516.2 459 56.4
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 5.6e-144 515.0 428 61.2
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 5.6e-144 515.0 392 64.5
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 5.6e-144 515.0 426 58.5
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 9.6e-144 514.2 428 60.5
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 9.6e-144 514.2 428 60.5
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 9.6e-144 514.2 428 60.5
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 9.6e-144 514.2 424 61.1
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 9.6e-144 514.2 421 59.6
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.3e-143 513.8 424 61.1
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.3e-143 513.8 429 57.8
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 2.8e-143 512.7 428 59.3
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 3.7e-143 512.3 426 58.2
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 4.8e-143 511.9 424 60.8
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 4.8e-143 511.9 424 60.8
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 4.8e-143 511.9 424 60.8
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 1.8e-142 510.0 428 60.7
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.2e-141 507.3 430 58.1
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 1.2e-141 507.3 438 58.4
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 2.0e-141 506.5 428 59.8
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 2.0e-141 506.5 423 59.1
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.6e-141 506.1 430 57.2
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 2.6e-141 506.1 430 57.0
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 2.6e-141 506.1 425 60.2
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 3.4e-141 505.8 428 57.2
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 5.8e-141 505.0 414 60.6
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 7.6e-141 504.6 344 66.9
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 1.3e-140 503.8 413 58.6
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 4.9e-140 501.9 424 59.7
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 1.1e-139 500.7 430 57.7
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 1.1e-139 500.7 425 59.1
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 1.9e-139 500.0 419 58.2
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 4.2e-139 498.8 433 57.7
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 1.8e-137 493.4 428 56.1
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 3.0e-137 492.7 449 55.9
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.9e-136 490.0 357 64.4
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 5.7e-136 488.4 434 55.8
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 2.8e-135 486.1 416 56.5
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 1.1e-134 484.2 456 54.4
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 9.0e-134 481.1 420 56.9
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 1.5e-133 480.3 430 57.7
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 3.4e-133 479.2 413 58.4
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.2e-132 476.5 418 55.3
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.2e-132 476.5 347 63.7
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.5e-131 473.0 457 54.5
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 2.5e-131 473.0 416 57.7
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 1.1e-128 464.2 337 66.8
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-127 460.7 429 56.2
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-127 460.7 432 55.3
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-126 457.2 412 57.3
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 4.1e-126 455.7 414 56.5
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 6.9e-126 454.9 417 55.4
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 9.0e-126 454.5 332 61.7
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 3.4e-125 452.6 415 56.6
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 7.7e-125 451.4 430 54.7
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-124 450.7 429 54.1
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 1.9e-123 446.8 291 69.4
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 2.5e-123 446.4 416 56.7
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 1.2e-122 444.1 428 54.2
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 2.7e-122 443.0 357 56.3
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.7e-122 443.0 431 51.5
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.8e-121 440.3 423 54.1
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 6.7e-121 438.3 455 53.2
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.0e-117 426.8 341 57.2
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.8e-116 422.5 408 51.7
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 3.3e-112 409.5 438 52.3
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.1e-110 404.4 343 55.4
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 5.9e-109 398.7 375 52.5
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 5.0e-108 395.6 343 53.6
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 7.2e-107 391.7 250 70.4
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 2.6e-104 383.3 250 67.6
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 7.4e-104 381.7 343 51.9
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.2e-103 380.2 310 58.1
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 2.2e-100 370.2 400 44.0
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.1e-99 367.9 358 47.8
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 9.4e-99 364.8 341 51.6
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 8.0e-98 361.7 241 66.8
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.2e-95 353.6 366 47.5
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 2.4e-94 350.1 358 46.6
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 4.1e-94 349.4 296 63.2
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 4.5e-93 345.9 341 48.7
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 1.9e-91 340.5 240 65.8
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 1.2e-90 337.8 355 46.2
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 5.7e-88 328.9 348 47.4
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.3e-84 317.8 385 45.7
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 1.9e-83 313.9 237 58.2
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 1.2e-80 304.7 237 56.5
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.4e-78 295.8 344 44.5
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.0e-76 291.6 357 42.0
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.3e-76 290.4 346 42.2
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 6.6e-76 288.9 298 48.3
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.6e-72 276.9 342 41.2
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 6.4e-71 272.3 343 39.4
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 7.8e-69 265.4 240 50.0
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.6e-67 259.2 345 40.0
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.0e-64 250.8 348 38.5
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.1e-62 245.0 377 36.6
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.2e-37 161.8 147 54.4
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 1.1e-35 155.2 420 27.9
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 1.5e-35 154.8 154 50.6
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 3.4e-24 117.1 85 60.0
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.2e-21 108.6 141 48.9
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 7.9e-21 105.9 114 39.5
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 1.1e-19 102.1 79 53.2
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 3.3e-19 100.5 119 42.0
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.1e-14 85.5 100 36.0
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.3e-12 78.6 73 46.6
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.3e-12 77.8 152 36.2
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.4e-06 58.5 36 72.2


User provided reference genes

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