Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G056600 Theobroma cacao HOM05D000192 ORTHO05D000123 7.5e-37 156.8 84 100.0
TAR376G1163 Trochodendron aralioides HOM05D000192 ORTHO05D000123 5.8e-13 77.4 84 52.4
MBI05_g25545_MAGBIO Magnolia biondii HOM05D000192 ORTHO05D000123 7.1e-11 70.5 80 48.8
Prupe.7G178200 Prunus persica HOM05D000192 ORTHO05D000123 1.2e-10 69.7 81 50.6
Aqoxy6G01772 Aquilegia oxysepala HOM05D000192 ORTHO05D000123 1.3e-09 66.2 84 50.0
CiPaw.08G180200 Carya illinoinensis HOM05D000192 ORTHO05D000123 1.3e-09 66.2 84 47.6
TAR376G1126 Trochodendron aralioides HOM05D000192 ORTHO05D000123 3.0e-09 65.1 79 46.8
Potri.004G182400 Populus trichocarpa HOM05D000192 ORTHO05D000123 3.9e-09 64.7 79 41.8
QL04p083834 Quercus lobata HOM05D000192 ORTHO05D000123 3.9e-09 64.7 82 45.1
Manes.01G153100 Manihot esculenta HOM05D000192 ORTHO05D000123 5.1e-09 64.3 77 45.5
Manes.13G121500 Manihot esculenta HOM05D000192 ORTHO05D000123 5.1e-09 64.3 84 47.6
Nn8g40858 Nelumbo nucifera HOM05D000192 ORTHO05D000123 6.6e-09 63.9 79 46.8
Manes.13G121700 Manihot esculenta HOM05D000192 ORTHO05D000123 8.7e-09 63.5 84 47.6
Manes.12G105700 Manihot esculenta HOM05D000192 ORTHO05D000123 1.5e-08 62.8 84 47.6
CAN.G311.107 Capsicum annuum HOM05D000192 ORTHO05D000123 1.9e-08 62.4 84 46.4
Manes.12G104900 Manihot esculenta HOM05D000192 ORTHO05D000123 1.9e-08 62.4 84 47.6
Manes.12G105800 Manihot esculenta HOM05D000192 ORTHO05D000123 2.5e-08 62.0 84 48.8
Nn8g40855 Nelumbo nucifera HOM05D000192 ORTHO05D000123 2.5e-08 62.0 79 45.6
Nn8g40863 Nelumbo nucifera HOM05D000192 ORTHO05D000123 3.3e-08 61.6 79 45.6
RcHm_v2.0_Chr2g0097861 Rosa chinensis HOM05D000192 ORTHO05D000123 4.3e-08 61.2 82 47.6
CiPaw.11G060300 Carya illinoinensis HOM05D000192 ORTHO05D000123 5.6e-08 60.8 80 40.0
Nn8g40853 Nelumbo nucifera HOM05D000192 ORTHO05D000123 5.6e-08 60.8 79 43.0
CSS0017598 Camellia sinensis var. sinensis HOM05D000192 ORTHO05D000123 7.3e-08 60.5 69 50.7
CSS0030835 Camellia sinensis var. sinensis HOM05D000192 ORTHO05D000123 7.3e-08 60.5 69 50.7
Lj2C490G0 Lonicera japonica HOM05D000192 ORTHO05D000123 7.3e-08 60.5 84 42.9
Nn8g40851 Nelumbo nucifera HOM05D000192 ORTHO05D000123 7.3e-08 60.5 80 43.8
TPR.G14975 Trifolium pratense HOM05D000192 ORTHO05D000123 7.3e-08 60.5 75 40.0
CiPaw.05G090400 Carya illinoinensis HOM05D000192 ORTHO05D000123 9.6e-08 60.1 84 41.7
FvH4_1g10710 Fragaria vesca HOM05D000192 ORTHO05D000123 9.6e-08 60.1 82 46.3
FAN19G0711 Fragaria x ananassa HOM05D000192 ORTHO05D000123 9.6e-08 60.1 82 46.3
FAN28G2398 Fragaria x ananassa HOM05D000192 ORTHO05D000123 9.6e-08 60.1 82 46.3
Manes.13G122200 Manihot esculenta HOM05D000192 ORTHO05D000123 9.6e-08 60.1 84 45.2
Prupe.8G175400 Prunus persica HOM05D000192 ORTHO05D000123 9.6e-08 60.1 85 40.0
Manes.12G105100 Manihot esculenta HOM05D000192 ORTHO05D000123 1.2e-07 59.7 84 46.4
Thecc.02G048400 Theobroma cacao HOM05D000192 ORTHO05D000123 1.2e-07 59.7 78 44.9
Prupe.2G076800 Prunus persica HOM05D000192 ORTHO05D000123 1.6e-07 59.3 84 40.5
TWI73G0614 Tripterygium wilfordii HOM05D000192 ORTHO05D000123 1.6e-07 59.3 84 41.7
FAN23G0911 Fragaria x ananassa HOM05D000192 ORTHO05D000123 2.1e-07 58.9 82 47.6
Hma1.2p1_0552F.1_g177620 Hydrangea macrophylla HOM05D000192 ORTHO05D000123 2.1e-07 58.9 81 42.0
Manes.12G104700 Manihot esculenta HOM05D000192 ORTHO05D000123 2.1e-07 58.9 84 46.4
PGR142G3270 Punica granatum HOM05D000192 ORTHO05D000123 2.1e-07 58.9 84 40.5
FvH4_1g10690 Fragaria vesca HOM05D000192 ORTHO05D000123 2.8e-07 58.5 82 47.6
FvH4_1g10720 Fragaria vesca HOM05D000192 ORTHO05D000123 2.8e-07 58.5 81 44.4
FAN19G3203 Fragaria x ananassa HOM05D000192 ORTHO05D000123 2.8e-07 58.5 82 47.6
FAN26G1606 Fragaria x ananassa HOM05D000192 ORTHO05D000123 2.8e-07 58.5 82 47.6
Glyma.11G115500 Glycine max HOM05D000192 ORTHO05D000123 2.8e-07 58.5 84 41.7
Glyma.12G041400 Glycine max HOM05D000192 ORTHO05D000123 2.8e-07 58.5 84 41.7
Manes.13G121900 Manihot esculenta HOM05D000192 ORTHO05D000123 2.8e-07 58.5 84 45.2
Nn5g30913 Nelumbo nucifera HOM05D000192 ORTHO05D000123 2.8e-07 58.5 81 46.9
Nn6g31761 Nelumbo nucifera HOM05D000192 ORTHO05D000123 2.8e-07 58.5 83 47.0
Potri.009G142500 Populus trichocarpa HOM05D000192 ORTHO05D000123 2.8e-07 58.5 79 40.5
Potri.004G182700 Populus trichocarpa HOM05D000192 ORTHO05D000123 3.6e-07 58.2 69 50.7
FAN28G2601 Fragaria x ananassa HOM05D000192 ORTHO05D000123 4.7e-07 57.8 82 47.6
MD15G1234800 Malus domestica HOM05D000192 ORTHO05D000123 4.7e-07 57.8 79 48.1
MD15G1234900 Malus domestica HOM05D000192 ORTHO05D000123 4.7e-07 57.8 83 43.4
Manes.12G105200 Manihot esculenta HOM05D000192 ORTHO05D000123 4.7e-07 57.8 70 52.9
Nn6g31776 Nelumbo nucifera HOM05D000192 ORTHO05D000123 4.7e-07 57.8 83 45.8
Nn8g40861 Nelumbo nucifera HOM05D000192 ORTHO05D000123 4.7e-07 57.8 79 40.5
Nn8g40862 Nelumbo nucifera HOM05D000192 ORTHO05D000123 4.7e-07 57.8 79 41.8
TWI75G0069 Tripterygium wilfordii HOM05D000192 ORTHO05D000123 4.7e-07 57.8 84 41.7
Gohir.D01G164800 Gossypium hirsutum HOM05D000192 ORTHO05D000123 6.2e-07 57.4 81 44.4
Gorai.002G204200 Gossypium raimondii HOM05D000192 ORTHO05D000123 6.2e-07 57.4 81 44.4
Gorai.002G204900 Gossypium raimondii HOM05D000192 ORTHO05D000123 6.2e-07 57.4 81 44.4
Lalb_Chr05g0211991 Lupinus albus HOM05D000192 ORTHO05D000123 6.2e-07 57.4 69 49.3
Sabra09G0110500 Salix brachista HOM05D000192 ORTHO05D000123 6.2e-07 57.4 75 41.3
FAN23G1507 Fragaria x ananassa HOM05D000192 ORTHO05D000123 8.1e-07 57.0 81 46.9
RcHm_v2.0_Chr2g0097871 Rosa chinensis HOM05D000192 ORTHO05D000123 8.1e-07 57.0 82 47.6
Sabra04G0122800 Salix brachista HOM05D000192 ORTHO05D000123 8.1e-07 57.0 79 39.2
arahy.Tifrunner.gnm1.ann1.EL9BSJ Arachis hypogaea HOM05D000192 ORTHO05D000123 1.1e-06 56.6 80 40.0
arahy.Tifrunner.gnm1.ann1.R39A5A Arachis hypogaea HOM05D000192 ORTHO05D000123 1.1e-06 56.6 80 40.0
FAN23G2902 Fragaria x ananassa HOM05D000192 ORTHO05D000123 1.1e-06 56.6 80 42.5
FAN26G2003 Fragaria x ananassa HOM05D000192 ORTHO05D000123 1.1e-06 56.6 81 45.7
FAN28G2558 Fragaria x ananassa HOM05D000192 ORTHO05D000123 1.1e-06 56.6 80 42.5
Manes.02G111800 Manihot esculenta HOM05D000192 ORTHO05D000123 1.1e-06 56.6 77 41.6
Manes.12G106000 Manihot esculenta HOM05D000192 ORTHO05D000123 1.1e-06 56.6 84 46.4
Aqoxy6G01785 Aquilegia oxysepala HOM05D000192 ORTHO05D000123 1.4e-06 56.2 71 50.7
Aqoxy6G01795 Aquilegia oxysepala HOM05D000192 ORTHO05D000123 1.4e-06 56.2 84 38.1
Lj2C489T11 Lonicera japonica HOM05D000192 ORTHO05D000123 1.4e-06 56.2 84 41.7
MBI05_g38846_MAGBIO Magnolia biondii HOM05D000192 ORTHO05D000123 1.4e-06 56.2 85 42.4
MBI05_g46626_MAGBIO Magnolia biondii HOM05D000192 ORTHO05D000123 1.4e-06 56.2 85 40.0
Thecc.02G047700 Theobroma cacao HOM05D000192 ORTHO05D000123 1.4e-06 56.2 86 45.3
Gohir.D01G164300 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.8e-06 55.8 81 43.2
Gohir.D01G164600 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.8e-06 55.8 81 43.2
Lj1g0018150 Lotus japonicus HOM05D000192 ORTHO05D000123 1.8e-06 55.8 84 41.7
RcHm_v2.0_Chr2g0097881 Rosa chinensis HOM05D000192 ORTHO05D000123 1.8e-06 55.8 80 40.0
Sabra04G0122900 Salix brachista HOM05D000192 ORTHO05D000123 1.8e-06 55.8 69 49.3
Haze_07791 Corylus avellana HOM05D000192 ORTHO05D000123 2.4e-06 55.5 84 36.9
Gohir.D04G169600 Gossypium hirsutum HOM05D000192 ORTHO05D000123 2.4e-06 55.5 84 41.7
Gorai.012G157900 Gossypium raimondii HOM05D000192 ORTHO05D000123 2.4e-06 55.5 84 41.7
Psat7g102600 Pisum sativum HOM05D000192 ORTHO05D000123 2.4e-06 55.5 79 44.3
Sabra02G0009700 Salix brachista HOM05D000192 ORTHO05D000123 2.4e-06 55.5 80 46.2
Ah.02g129040 Amaranthus hybridus HOM05D000192 ORTHO05D000123 3.1e-06 55.1 68 44.1
CANSAT25G1811 Cannabis sativa HOM05D000192 ORTHO05D000123 3.1e-06 55.1 84 38.1
CANSAT25G3643 Cannabis sativa HOM05D000192 ORTHO05D000123 3.1e-06 55.1 84 39.3
Cfa007048 Carpinus fangiana HOM05D000192 ORTHO05D000123 3.1e-06 55.1 79 40.5
DCAR_013906 Daucus carota HOM05D000192 ORTHO05D000123 3.1e-06 55.1 73 46.6
Gohir.A04G125000 Gossypium hirsutum HOM05D000192 ORTHO05D000123 3.1e-06 55.1 84 41.7
MD02G1120800 Malus domestica HOM05D000192 ORTHO05D000123 3.1e-06 55.1 83 42.2
Nn6g31760 Nelumbo nucifera HOM05D000192 ORTHO05D000123 3.1e-06 55.1 84 44.0
Nn6g31762 Nelumbo nucifera HOM05D000192 ORTHO05D000123 3.1e-06 55.1 79 48.1
Sed0024781 Sechium edule HOM05D000192 ORTHO05D000123 3.1e-06 55.1 79 43.0
Thecc.01G008800 Theobroma cacao HOM05D000192 ORTHO05D000123 3.1e-06 55.1 79 44.3
Actinidia18013 Actinidia chinensis HOM05D000192 ORTHO05D000123 4.0e-06 54.7 84 36.9
Cfa019396 Carpinus fangiana HOM05D000192 ORTHO05D000123 4.0e-06 54.7 84 35.7
ClCG01G020750 Citrullus lanatus HOM05D000192 ORTHO05D000123 4.0e-06 54.7 79 43.0
Glyma.16G119500 Glycine max HOM05D000192 ORTHO05D000123 4.0e-06 54.7 69 42.0
Manes.13G121600 Manihot esculenta HOM05D000192 ORTHO05D000123 4.0e-06 54.7 69 50.7
PSO210G6530 Papaver somniferum HOM05D000192 ORTHO05D000123 4.0e-06 54.7 78 42.3
Prupe.8G175200 Prunus persica HOM05D000192 ORTHO05D000123 4.0e-06 54.7 84 36.9
QL04p083960 Quercus lobata HOM05D000192 ORTHO05D000123 4.0e-06 54.7 83 36.1
MELO3C007958.2 Cucumis melo HOM05D000192 ORTHO05D000123 5.2e-06 54.3 79 41.8
Glyma.11G082900 Glycine max HOM05D000192 ORTHO05D000123 5.2e-06 54.3 78 35.9
MD05G1130800 Malus domestica HOM05D000192 ORTHO05D000123 5.2e-06 54.3 85 38.8
Potri.009G142400 Populus trichocarpa HOM05D000192 ORTHO05D000123 5.2e-06 54.3 80 41.2
Potri.009G142600 Populus trichocarpa HOM05D000192 ORTHO05D000123 5.2e-06 54.3 80 41.2
QL02p095044 Quercus lobata HOM05D000192 ORTHO05D000123 5.2e-06 54.3 80 41.2
QL02p095095 Quercus lobata HOM05D000192 ORTHO05D000123 5.2e-06 54.3 85 38.8
QL04p083957 Quercus lobata HOM05D000192 ORTHO05D000123 5.2e-06 54.3 85 38.8
TWI31G0583 Tripterygium wilfordii HOM05D000192 ORTHO05D000123 5.2e-06 54.3 84 40.5
COL.COLO4_17950 Corchorus olitorius HOM05D000192 ORTHO05D000123 6.9e-06 53.9 82 45.1
CsaV3_6G047680 Cucumis sativus L. HOM05D000192 ORTHO05D000123 6.9e-06 53.9 79 41.8
FAN27G1935 Fragaria x ananassa HOM05D000192 ORTHO05D000123 6.9e-06 53.9 80 38.8
Lj2C490T3 Lonicera japonica HOM05D000192 ORTHO05D000123 6.9e-06 53.9 84 41.7
Medtr8g074510 Medicago truncatula HOM05D000192 ORTHO05D000123 6.9e-06 53.9 79 43.0
Nitab4.5_0000588g0200 Nicotiana tabacum HOM05D000192 ORTHO05D000123 6.9e-06 53.9 84 41.7
Potri.005G103800 Populus trichocarpa HOM05D000192 ORTHO05D000123 6.9e-06 53.9 79 38.0
TWI09G0500 Tripterygium wilfordii HOM05D000192 ORTHO05D000123 6.9e-06 53.9 79 40.5
Duzib147G0483 Durio zibethinus HOM05D000192 ORTHO05D000123 9.0e-06 53.5 79 45.6
Duzib187G1975 Durio zibethinus HOM05D000192 ORTHO05D000123 9.0e-06 53.5 79 44.3
Eucgr.I02280 Eucalyptus grandis HOM05D000192 ORTHO05D000123 9.0e-06 53.5 79 39.2
FAN20G2682 Fragaria x ananassa HOM05D000192 ORTHO05D000123 9.0e-06 53.5 80 37.5
Glyma.01G161000 Glycine max HOM05D000192 ORTHO05D000123 9.0e-06 53.5 78 35.9
Lj3g0000155 Lotus japonicus HOM05D000192 ORTHO05D000123 9.0e-06 53.5 84 41.7
Phvul.003G268400 Phaseolus vulgaris HOM05D000192 ORTHO05D000123 9.0e-06 53.5 69 40.6
QL02p095005 Quercus lobata HOM05D000192 ORTHO05D000123 9.0e-06 53.5 80 41.2
VMungo1127G0716 Vigna mungo HOM05D000192 ORTHO05D000123 9.0e-06 53.5 84 40.5
GSVIVG01004309001 Vitis vinifera HOM05D000192 ORTHO05D000123 9.0e-06 53.5 50 58.0


User provided reference genes

Program Settings