Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 5.0e-179 630.9 309 100.0
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 9.5e-154 547.0 309 85.1
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.6e-151 538.9 309 82.8
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.4e-151 538.5 309 82.8
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 8.0e-145 517.3 280 86.8
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 7.5e-143 510.8 310 79.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 3.5e-140 501.9 305 76.4
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 4.6e-140 501.5 309 77.3
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 7.8e-140 500.7 309 75.7
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.3e-139 499.2 309 75.7
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 2.5e-138 495.7 310 75.8
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 4.3e-138 495.0 309 76.7
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 9.5e-138 493.8 314 76.8
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 1.2e-137 493.4 310 77.4
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.2e-137 493.4 306 75.5
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 3.1e-136 488.8 309 76.4
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 3.1e-136 488.8 309 77.0
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.5e-135 486.5 309 76.1
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.5e-135 486.5 315 74.9
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 3.7e-134 481.9 309 74.4
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 6.4e-134 481.1 306 74.2
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.4e-133 479.9 309 74.4
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.9e-133 479.6 309 73.1
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.4e-133 479.2 309 74.8
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 2.4e-133 479.2 305 75.1
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 5.4e-133 478.0 309 73.5
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.2e-132 476.9 304 76.0
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 6.0e-132 474.6 309 74.4
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 7.8e-132 474.2 315 74.6
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.3e-131 473.4 307 73.0
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.7e-131 473.0 306 72.5
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 3.0e-131 472.2 305 74.4
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 6.6e-131 471.1 340 68.2
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.1e-130 470.3 305 73.1
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.5e-130 469.9 306 72.2
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 5.6e-130 468.0 305 72.5
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 5.6e-130 468.0 309 71.5
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.1e-129 466.1 305 72.1
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 2.1e-129 466.1 310 71.9
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 2.8e-129 465.7 302 74.5
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 4.7e-129 464.9 319 69.9
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.4e-128 463.4 302 71.5
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.8e-128 463.0 306 72.2
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 2.4e-128 462.6 310 72.3
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 2.4e-128 462.6 304 72.4
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 4.0e-128 461.8 311 72.7
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 6.8e-128 461.1 281 78.6
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 4.4e-127 458.4 303 71.3
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 4.4e-127 458.4 307 72.3
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 7.6e-127 457.6 305 69.5
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 9.9e-127 457.2 302 71.5
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.7e-126 456.4 306 71.9
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.7e-126 456.4 305 72.1
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 8.4e-126 454.1 302 69.5
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.1e-125 453.8 306 71.2
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.9e-125 453.0 305 72.8
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 4.2e-125 451.8 309 69.3
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 5.4e-125 451.4 305 72.5
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 7.1e-125 451.1 309 70.2
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 1.2e-124 450.3 307 70.4
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.1e-124 449.5 306 70.3
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 3.5e-124 448.7 306 70.3
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 4.6e-124 448.4 305 71.8
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 4.6e-124 448.4 290 74.8
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 4.6e-124 448.4 309 69.6
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 6.0e-124 448.0 340 65.3
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.3e-123 446.8 306 69.3
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 8.7e-123 444.1 305 71.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 8.7e-123 444.1 307 68.1
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.5e-122 443.4 311 69.1
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 9.6e-122 440.7 306 66.0
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 3.6e-121 438.7 336 64.6
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.1e-120 437.2 307 67.1
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 3.1e-120 435.6 309 68.3
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 3.1e-120 435.6 310 66.5
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 1.2e-119 433.7 307 67.8
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 5.8e-119 431.4 315 67.0
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 7.6e-119 431.0 299 67.2
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.3e-118 430.3 305 68.5
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 8.4e-118 427.6 314 72.6
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.9e-117 426.4 306 67.3
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 7.1e-117 424.5 302 64.6
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.9e-116 421.0 296 66.9
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.3e-115 419.5 352 61.6
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 3.9e-115 418.7 309 64.4
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 3.1e-112 409.1 345 60.0
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 9.9e-111 404.1 282 71.3
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.3e-110 403.7 283 68.2
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.7e-110 403.3 329 61.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.8e-110 402.1 282 70.6
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 4.9e-110 401.7 369 55.8
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 6.0e-108 394.8 285 68.8
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 7.9e-108 394.4 309 64.1
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.3e-99 367.1 302 62.9
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.5e-98 362.8 302 59.3
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 1.3e-97 360.5 309 58.3
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.7e-97 359.0 223 76.2
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.4e-96 356.3 308 58.8
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 1.1e-93 347.4 282 63.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 2.5e-93 346.3 320 55.0
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 2.5e-93 346.3 299 57.2
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 9.3e-93 344.4 302 56.0
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 2.5e-90 336.3 222 72.1
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.8e-88 330.1 299 55.9
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 9.0e-88 327.8 283 58.7
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.9e-85 320.1 237 64.6
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 8.2e-81 304.7 201 70.6
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 7.2e-77 291.6 314 46.8
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 3.8e-70 269.2 199 62.8
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.9e-69 266.9 192 68.8
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.6e-68 263.8 201 63.2
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.3e-67 260.0 218 57.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.6e-66 256.5 167 72.5
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 4.4e-66 255.8 198 62.1
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 7.0e-64 248.4 235 55.3
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.6e-55 220.7 309 43.4
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 4.5e-55 219.2 137 76.6
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 5.5e-53 212.2 208 52.9
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 2.7e-52 209.9 394 36.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.7e-47 193.4 152 56.6
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.9e-46 189.9 201 50.7
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.5e-42 177.6 131 67.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.1e-37 161.4 301 33.9
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.8e-35 154.1 112 64.3
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 3.1e-35 153.3 298 33.9
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.0e-35 152.9 271 35.8
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 6.6e-30 135.6 113 55.8
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.5e-29 133.7 83 74.7
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 7.5e-26 122.1 87 59.8
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 3.1e-19 100.1 74 70.3
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 7.6e-18 95.5 81 60.5
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 3.9e-14 83.2 63 60.3
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.5e-13 80.5 57 66.7
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.2e-12 78.2 126 37.3
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 3.6e-12 76.6 79 50.6
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.4e-08 63.9 55 54.5
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 8.7e-06 55.5 36 75.0


User provided reference genes

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