Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 1.1e-76 290.0 157 100.0
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 5.3e-68 261.2 157 85.4
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.9e-62 242.7 157 78.3
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.6e-59 232.3 153 77.1
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.6e-59 232.3 153 79.7
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 2.6e-59 232.3 156 76.3
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.5e-59 231.5 153 81.0
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 3.2e-57 225.3 153 75.8
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.1e-54 216.9 157 79.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 1.9e-54 216.1 152 81.6
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 3.3e-54 215.3 157 70.7
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.3e-53 213.4 155 70.3
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 3.7e-53 211.8 144 75.0
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 8.2e-53 210.7 154 73.4
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 8.2e-53 210.7 157 66.2
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.8e-52 209.5 157 68.8
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 1.8e-52 209.5 159 73.0
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.8e-52 209.5 157 75.2
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 4.1e-52 208.4 150 70.7
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 6.9e-52 207.6 151 70.9
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.5e-51 206.5 144 77.8
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.0e-51 206.1 153 72.5
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 4.5e-51 204.9 157 68.2
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 5.9e-51 204.5 157 67.5
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 2.2e-50 202.6 144 70.8
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 3.8e-50 201.8 152 67.1
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 5.0e-50 201.4 123 81.3
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 8.5e-50 200.7 152 68.4
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 8.5e-50 200.7 128 78.1
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 8.5e-50 200.7 153 66.0
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 8.5e-50 200.7 152 67.1
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.4e-49 199.9 152 66.4
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 1.9e-49 199.5 136 73.5
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.9e-49 199.5 146 67.8
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 4.2e-49 198.4 155 67.1
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 5.5e-49 198.0 145 78.6
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 7.2e-49 197.6 127 74.8
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 7.2e-49 197.6 153 68.6
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 9.4e-49 197.2 138 75.4
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.2e-48 196.8 154 64.9
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 1.6e-48 196.4 124 76.6
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 2.1e-48 196.1 157 63.7
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 3.6e-48 195.3 153 64.7
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 3.6e-48 195.3 149 68.5
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 4.6e-48 194.9 155 64.5
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 4.6e-48 194.9 130 83.8
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 4.6e-48 194.9 151 66.2
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 6.1e-48 194.5 155 66.5
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 6.1e-48 194.5 128 76.6
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 6.1e-48 194.5 134 82.1
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 6.1e-48 194.5 136 72.8
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 6.1e-48 194.5 153 74.5
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 6.1e-48 194.5 152 65.1
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.0e-47 193.7 131 77.1
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.4e-47 193.4 154 64.3
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 1.4e-47 193.4 150 65.3
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.8e-47 193.0 155 67.1
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.8e-47 193.0 132 78.8
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.9e-47 191.8 156 73.7
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 5.1e-47 191.4 155 66.5
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 5.1e-47 191.4 153 65.4
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 5.1e-47 191.4 154 64.3
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 5.1e-47 191.4 154 64.3
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 5.1e-47 191.4 125 76.0
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 5.1e-47 191.4 152 63.8
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 8.8e-47 190.7 124 74.2
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 1.1e-46 190.3 151 65.6
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.5e-46 189.9 124 73.4
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 2.0e-46 189.5 154 64.3
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 3.3e-46 188.7 154 64.3
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 3.3e-46 188.7 154 63.6
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 3.3e-46 188.7 129 75.2
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 7.4e-46 187.6 150 67.3
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 7.4e-46 187.6 151 72.2
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 9.7e-46 187.2 124 75.8
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 9.7e-46 187.2 125 75.2
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 1.3e-45 186.8 123 74.8
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 2.2e-45 186.0 158 60.1
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.8e-45 185.7 125 75.2
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 6.3e-45 184.5 125 73.6
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.1e-44 183.7 123 71.5
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 5.3e-44 181.4 150 60.0
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.5e-43 179.9 158 62.0
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.0e-43 179.5 158 63.9
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 4.5e-43 178.3 158 67.7
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 2.9e-42 175.6 123 72.4
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.1e-41 173.7 135 65.9
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 1.4e-41 173.3 124 75.8
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 1.4e-41 173.3 130 76.2
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.5e-41 172.6 137 69.3
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 4.2e-41 171.8 138 72.5
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 5.5e-41 171.4 127 67.7
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 2.1e-40 169.5 121 68.6
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 6.1e-40 167.9 128 72.7
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 6.1e-40 167.9 120 70.0
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.4e-39 166.8 154 57.8
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 2.3e-39 166.0 138 70.3
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 5.2e-39 164.9 114 72.8
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.0e-38 162.9 129 66.7
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.6e-38 162.5 126 67.5
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 1.3e-37 160.2 118 66.9
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 6.3e-37 157.9 118 66.1
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 4.1e-36 155.2 130 59.2
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 3.5e-35 152.1 134 61.2
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 4.5e-35 151.8 129 62.8
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.2e-32 143.7 154 51.3
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 1.6e-32 143.3 154 51.3
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 1.2e-30 137.1 122 55.7
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 9.1e-28 127.5 86 74.4
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 2.0e-27 126.3 122 48.4
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 3.8e-26 122.1 114 55.3
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 1.1e-25 120.6 103 62.1
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 1.0e-23 114.0 124 48.4
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 2.3e-23 112.8 118 52.5
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 1.2e-22 110.5 92 62.0
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 4.8e-21 105.1 132 48.5
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 9.1e-20 100.9 91 61.5
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 2.3e-18 96.3 85 60.0
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 2.3e-18 96.3 81 55.6
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 5.0e-18 95.1 110 43.6
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 6.5e-18 94.7 149 39.6
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 8.3e-13 77.8 116 42.2
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 2.5e-09 66.2 57 64.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.6e-06 56.2 49 63.3


User provided reference genes

Program Settings