Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.1e-136 488.4 239 100.0
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.1e-117 426.8 238 87.4
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.2e-105 386.0 237 80.2
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.0e-102 377.1 239 77.8
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 4.0e-99 365.2 236 76.7
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 5.7e-82 308.1 222 64.4
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 3.1e-80 302.4 211 65.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 9.2e-80 300.8 208 66.3
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.7e-79 299.3 227 63.4
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.7e-79 299.3 182 78.6
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.5e-79 298.9 211 64.5
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.9e-79 298.1 201 68.7
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 5.9e-79 298.1 208 66.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.3e-77 292.4 217 64.5
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 5.6e-77 291.6 208 64.9
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.8e-76 289.3 207 64.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.6e-76 288.9 227 61.7
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.1e-76 288.1 230 60.9
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.8e-75 286.6 195 67.7
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 5.2e-75 285.0 207 64.3
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 6.8e-75 284.6 234 57.7
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.5e-74 283.5 210 64.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.0e-74 283.1 207 62.3
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 7.5e-74 281.2 229 58.5
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 3.7e-73 278.9 221 60.6
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.9e-73 278.5 208 62.0
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 8.3e-73 277.7 230 59.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 8.3e-73 277.7 229 59.8
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 8.3e-73 277.7 233 58.8
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.8e-72 276.6 205 62.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.4e-72 276.2 225 59.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.2e-72 275.8 217 61.8
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 4.1e-72 275.4 213 60.1
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 5.4e-72 275.0 208 61.1
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 9.2e-72 274.2 208 61.1
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.2e-71 273.9 210 61.4
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.0e-71 273.1 208 63.5
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 2.7e-71 272.7 196 63.3
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.6e-71 271.9 225 60.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 6.0e-71 271.6 216 58.3
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.3e-70 270.4 231 56.7
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.3e-70 270.4 211 60.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 2.3e-70 269.6 228 57.5
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 3.9e-70 268.9 221 58.4
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 5.0e-70 268.5 219 58.4
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.0e-70 268.5 204 65.2
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 6.6e-70 268.1 224 57.6
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 6.6e-70 268.1 203 61.6
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.1e-69 267.3 217 56.2
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.1e-69 267.3 212 63.7
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 3.3e-69 265.8 209 60.8
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 4.3e-69 265.4 198 62.1
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 4.3e-69 265.4 209 58.9
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 5.6e-69 265.0 201 62.7
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 7.3e-69 264.6 207 60.4
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.5e-69 264.2 208 58.2
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.6e-68 263.5 203 60.1
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 2.1e-68 263.1 222 54.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.1e-68 263.1 205 60.5
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.1e-68 263.1 205 60.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.8e-68 262.7 212 59.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.8e-68 262.7 209 61.7
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.8e-68 262.7 215 60.0
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.8e-68 262.7 215 60.0
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 3.6e-68 262.3 216 57.4
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 4.7e-68 261.9 203 62.6
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 4.7e-68 261.9 198 61.1
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.2e-68 261.5 227 55.9
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 6.2e-68 261.5 200 62.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 8.0e-68 261.2 199 60.8
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 8.0e-68 261.2 203 62.6
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 8.0e-68 261.2 216 59.3
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-67 260.8 209 61.2
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-67 260.4 217 58.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-67 260.4 200 62.5
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-67 260.0 203 62.1
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.1e-67 259.2 217 56.2
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.0e-67 258.8 207 57.0
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 4.0e-67 258.8 205 57.6
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 5.2e-67 258.5 203 63.5
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 6.8e-67 258.1 216 57.4
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 8.9e-67 257.7 203 61.1
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 2.0e-66 256.5 202 58.4
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.4e-66 255.8 199 61.3
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 7.5e-66 254.6 199 57.3
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.9e-65 252.7 197 61.4
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.9e-65 252.7 214 59.3
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.7e-65 252.3 216 56.9
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 6.4e-65 251.5 199 60.8
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.4e-64 250.4 197 59.9
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.9e-64 250.0 199 60.8
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.9e-64 250.0 206 58.3
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.9e-64 250.0 211 54.5
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 3.2e-64 249.2 204 58.3
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 5.4e-64 248.4 209 57.9
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 5.4e-64 248.4 202 56.4
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 9.2e-64 247.7 202 56.9
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-63 247.3 212 56.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.2e-63 247.3 209 56.9
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.6e-63 246.9 189 62.4
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.6e-63 246.9 202 56.4
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.5e-63 245.7 210 57.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 4.6e-63 245.4 193 59.1
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 7.8e-63 244.6 203 56.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-62 243.8 197 57.4
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-62 243.8 212 56.6
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-62 243.8 212 56.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-62 243.8 203 56.2
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.3e-62 243.8 211 55.5
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.3e-62 243.8 217 54.4
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.3e-62 243.0 212 53.8
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 5.0e-62 241.9 198 58.6
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.1e-61 240.7 249 49.4
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.1e-61 240.7 200 56.0
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-61 240.4 212 53.8
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.9e-61 240.0 197 57.4
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.3e-61 239.2 206 56.8
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 4.3e-61 238.8 189 57.7
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 8.1e-60 234.6 230 52.2
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 5.2e-59 231.9 196 55.1
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.2e-59 231.9 197 54.3
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 8.9e-59 231.1 219 49.3
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.2e-58 230.7 221 52.5
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.5e-58 230.3 217 54.4
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.5e-58 230.3 231 51.1
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.5e-58 230.3 213 52.1
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.2e-57 226.5 210 51.9
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.7e-57 225.7 193 54.4
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 4.1e-56 222.2 217 50.2
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.1e-56 222.2 153 68.0
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.5e-55 219.2 210 50.0
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 6.0e-55 218.4 194 51.0
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 2.8e-52 209.5 203 49.8
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 8.1e-52 208.0 196 50.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.0e-51 205.7 214 46.7
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.2e-51 205.3 175 56.0
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.2e-50 204.1 209 47.4
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.8e-50 201.8 207 49.3
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.3e-49 200.7 199 49.7
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 8.4e-49 198.0 219 51.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.9e-48 196.8 191 49.7
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.2e-47 194.1 167 58.1
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.9e-45 186.8 127 68.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 8.1e-44 181.4 139 61.9
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.0e-42 176.8 207 43.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.9e-42 174.5 210 46.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.4e-40 168.7 142 55.6
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 8.7e-38 161.4 153 53.6
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.8e-35 153.7 201 38.8
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 2.6e-34 149.8 106 67.9
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 7.6e-34 148.3 143 51.7
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 4.9e-33 145.6 106 63.2
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.1e-32 144.4 222 36.9
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 7.1e-32 141.7 109 59.6
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.0e-31 138.7 114 57.9
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.9e-31 138.3 131 52.7
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.3e-30 137.5 126 51.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 3.1e-27 126.3 123 50.4
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.5e-26 124.0 103 56.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.6e-26 123.2 111 53.2
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 3.4e-26 122.9 111 52.3
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 9.9e-26 121.3 174 40.2
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-24 117.5 81 67.9
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.5e-24 115.5 87 62.1
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-23 114.4 135 44.4
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.6e-23 114.0 84 63.1
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.1e-23 113.6 106 50.0
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-23 113.2 102 52.9
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.3e-22 110.9 173 32.9
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 7.4e-21 105.1 115 55.7
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 9.6e-21 104.8 148 36.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-19 101.3 84 56.0
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-17 94.0 86 51.2
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-16 90.5 64 64.1
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 3.2e-16 89.7 78 52.6
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.2e-15 87.8 84 54.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-13 80.9 57 61.4


User provided reference genes

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