Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G044900 Theobroma cacao HOM05D007760 ORTHO05D008337 5.0e-169 597.8 330 100.0
Duzib041G0564 Durio zibethinus HOM05D007760 ORTHO05D008337 1.2e-93 347.4 316 66.8
Duzib116G0858 Durio zibethinus HOM05D007760 ORTHO05D008337 4.2e-91 339.0 329 62.9
COL.COLO4_26143 Corchorus olitorius HOM05D007760 ORTHO05D008337 6.5e-60 235.3 332 50.3
Duzib093G0245 Durio zibethinus HOM05D007760 ORTHO05D008337 1.3e-47 194.5 202 62.4
Gorai.010G004100 Gossypium raimondii HOM05D007760 ORTHO05D008337 7.7e-45 185.3 328 45.7
Gohir.D06G006600 Gossypium hirsutum HOM05D007760 ORTHO05D008337 1.8e-41 174.1 327 45.0
Gorai.010G003900 Gossypium raimondii HOM05D007760 ORTHO05D008337 1.8e-41 174.1 326 45.4
Gohir.A06G003700 Gossypium hirsutum HOM05D007760 ORTHO05D008337 8.9e-41 171.8 327 44.3
Gohir.A06G003900 Gossypium hirsutum HOM05D007760 ORTHO05D008337 9.8e-40 168.3 326 44.5
Gorai.010G004000 Gossypium raimondii HOM05D007760 ORTHO05D008337 3.2e-38 163.3 317 45.4
Gohir.D06G006700 Gossypium hirsutum HOM05D007760 ORTHO05D008337 4.1e-38 162.9 327 44.3
Gohir.A06G003800 Gossypium hirsutum HOM05D007760 ORTHO05D008337 4.7e-34 149.4 306 44.4
Manes.18G013300 Manihot esculenta HOM05D007760 ORTHO05D008337 9.8e-32 141.7 315 38.1
Gohir.D06G006800 Gossypium hirsutum HOM05D007760 ORTHO05D008337 1.1e-30 138.3 328 40.2
Dinv31848 Davidia involucrata HOM05D007760 ORTHO05D008337 1.0e-28 131.7 309 35.3
TAR381G0719 Trochodendron aralioides HOM05D007760 ORTHO05D008337 3.9e-28 129.8 313 37.1
Ciclev10001832m.g Citrus clementina HOM05D007760 ORTHO05D008337 5.2e-25 119.4 330 36.7
CSS0044946 Camellia sinensis var. sinensis HOM05D007760 ORTHO05D008337 1.2e-24 118.2 315 37.8
Oeu046271.1 Olea europaea HOM05D007760 ORTHO05D008337 4.4e-24 116.3 312 37.2
Dinv39521 Davidia involucrata HOM05D007760 ORTHO05D008337 7.1e-22 109.0 227 40.5
Rhsim06G0021400 Rhododendron simsii HOM05D007760 ORTHO05D008337 9.2e-22 108.6 327 32.7
QL02p011665 Quercus lobata HOM05D007760 ORTHO05D008337 2.1e-21 107.5 333 36.0
TAR625G0557 Trochodendron aralioides HOM05D007760 ORTHO05D008337 3.5e-21 106.7 304 34.5
RhsimUnG0065900 Rhododendron simsii HOM05D007760 ORTHO05D008337 1.6e-18 97.8 321 33.6
Actinidia15424 Actinidia chinensis HOM05D007760 ORTHO05D008337 6.2e-18 95.9 313 32.9
GSVIVG01009912001 Vitis vinifera HOM05D007760 ORTHO05D008337 6.2e-18 95.9 165 44.8
Oeu027538.2 Olea europaea HOM05D007760 ORTHO05D008337 2.3e-17 94.0 326 33.4
Potri.002G021900 Populus trichocarpa HOM05D007760 ORTHO05D008337 4.0e-17 93.2 349 31.2
TPR.G20837 Trifolium pratense HOM05D007760 ORTHO05D008337 4.0e-17 93.2 336 32.7
RhsimUnG0066000 Rhododendron simsii HOM05D007760 ORTHO05D008337 4.4e-16 89.7 318 32.1
Nitab4.5_0009651g0030 Nicotiana tabacum HOM05D007760 ORTHO05D008337 5.8e-16 89.4 301 32.2
SGA_v2.0_scaffold11G05919 Striga asiatica HOM05D007760 ORTHO05D008337 2.9e-15 87.0 325 30.5
GSVIVG01009892001 Vitis vinifera HOM05D000594 ORTHO05D002521 2.9e-15 87.0 131 48.1
MSTRG.24243 Avicennia marina HOM05D007760 ORTHO05D008337 3.7e-15 86.7 329 33.4
Manes.05G147200 Manihot esculenta HOM05D007760 ORTHO05D008337 3.7e-15 86.7 337 32.9
CiPaw.08G066600 Carya illinoinensis HOM05D007760 ORTHO05D008337 6.4e-15 85.9 318 34.9
Potri.005G239800 Populus trichocarpa HOM05D007760 ORTHO05D008337 1.1e-14 85.1 347 30.8
Lalb_Chr14g0369911 Lupinus albus HOM05D007760 ORTHO05D008337 1.4e-14 84.7 322 32.9
Peaxi162Scf00438g00084 Petunia axillaris HOM05D021694 ORTHO05D008337 1.4e-14 84.7 294 32.3
GSVIVG01009911001 Vitis vinifera HOM05D007760 ORTHO05D008337 1.4e-14 84.7 131 46.6
CiPaw.07G149400 Carya illinoinensis HOM05D007760 ORTHO05D008337 1.9e-14 84.3 313 34.5
Cpa.g.sc26.48 Carica papaya HOM05D007760 ORTHO05D008337 7.1e-14 82.4 160 40.0
Atru.chr13.288 Acer truncatum HOM05D007760 ORTHO05D008337 3.5e-13 80.1 335 31.6
Lalb_Chr23g0266151 Lupinus albus HOM05D007760 ORTHO05D008337 4.6e-13 79.7 323 31.9
MSTRG.1190 Avicennia marina HOM05D007760 ORTHO05D008337 6.0e-13 79.3 316 31.3
Nn5g29094 Nelumbo nucifera HOM05D007760 ORTHO05D008337 1.0e-12 78.6 358 31.0
Migut.C00840 Erythranthe guttata HOM05D007760 ORTHO05D008337 1.3e-12 78.2 332 31.3
Solyc04g081480.3 Solanum lycopersicum HOM05D021694 ORTHO05D008337 1.3e-12 78.2 295 32.2
Phvul.009G017200 Phaseolus vulgaris HOM05D007760 ORTHO05D008337 3.9e-12 76.6 329 31.6
Sopen04g035090 Solanum pennellii HOM05D021694 ORTHO05D008337 3.9e-12 76.6 295 31.5
Lalb_Chr11g0061901 Lupinus albus HOM05D007760 ORTHO05D008337 6.6e-12 75.9 318 33.0
Sabra05G0185300 Salix brachista HOM05D007760 ORTHO05D008337 3.3e-11 73.6 337 28.5
Glyma.06G024200 Glycine max HOM05D007760 ORTHO05D008337 4.3e-11 73.2 327 29.1
VMungo1309G0539 Vigna mungo HOM05D007760 ORTHO05D008337 1.6e-10 71.2 335 29.9
MELO3C011015.2 Cucumis melo HOM05D016278 ORTHO05D008337 2.8e-10 70.5 315 31.1
Glyma.04G024000 Glycine max HOM05D007760 ORTHO05D008337 6.2e-10 69.3 332 28.6
FAN20G0648 Fragaria x ananassa HOM05D015458 ORTHO05D008337 1.8e-09 67.8 334 28.7
FAN15G2338 Fragaria x ananassa HOM05D015458 ORTHO05D008337 3.1e-09 67.0 334 28.1
Migut.N03163 Erythranthe guttata HOM05D007760 ORTHO05D008337 4.0e-09 66.6 333 29.7
SalBow7G2592 Salvia bowleyana HOM05D007760 ORTHO05D008337 4.0e-09 66.6 317 29.3
Cfa013954 Carpinus fangiana HOM05D007760 ORTHO05D008337 6.8e-09 65.9 326 32.2
FvH4_2g38410 Fragaria vesca HOM05D015458 ORTHO05D008337 6.8e-09 65.9 329 28.6
TWI36G1437 Tripterygium wilfordii HOM05D007760 ORTHO05D008337 1.5e-08 64.7 329 29.8
Medtr1g025290 Medicago truncatula HOM05D007760 ORTHO05D008337 2.0e-08 64.3 321 29.3
Rhsim07G0247700 Rhododendron simsii HOM05D007760 ORTHO05D008337 2.6e-08 63.9 240 32.1
Lj1g0003650 Lotus japonicus HOM05D007760 ORTHO05D008337 5.8e-08 62.8 321 28.7
MD08G1012900 Malus domestica HOM05D015458 ORTHO05D008337 5.8e-08 62.8 338 29.0
vmacro22892 Vaccinium macrocarpon HOM05D007760 ORTHO05D008337 7.6e-08 62.4 320 28.4
Nitab4.5_0000192g0190 Nicotiana tabacum HOM05D021694 ORTHO05D008337 1.7e-07 61.2 158 37.3
arahy.Tifrunner.gnm1.ann1.EU98QJ Arachis hypogaea HOM05D007760 ORTHO05D008337 3.8e-07 60.1 356 27.8
Nitab4.5_0025981g0010 Nicotiana tabacum HOM05D007760 ORTHO05D008337 3.8e-07 60.1 159 37.1
FAN27G2463 Fragaria x ananassa HOM05D015458 ORTHO05D008337 6.4e-07 59.3 342 29.5
SalBow8G4233 Salvia bowleyana HOM05D007760 ORTHO05D008337 1.1e-06 58.5 321 29.6
arahy.Tifrunner.gnm1.ann1.WD1IN2 Arachis hypogaea HOM05D007760 ORTHO05D008337 1.4e-06 58.2 345 27.0
Eucgr.F00585 Eucalyptus grandis HOM05D007760 ORTHO05D008337 1.9e-06 57.8 334 28.7
CsaV3_2G029560 Cucumis sativus L. HOM05D016278 ORTHO05D008337 3.2e-06 57.0 315 29.2
MBI05_g33714_MAGBIO Magnolia biondii HOM05D007760 ORTHO05D008337 3.2e-06 57.0 314 29.3
Lalb_Chr24g0398711 Lupinus albus HOM05D007760 ORTHO05D008337 5.4e-06 56.2 338 28.1


User provided reference genes

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