Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 8.0e-103 377.1 190 100.0
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.2e-53 213.8 251 55.8
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 8.4e-52 207.6 251 52.6
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 2.1e-50 203.0 254 52.4
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 6.0e-50 201.4 253 52.6
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.0e-49 199.1 253 52.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.9e-48 196.4 253 51.8
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.4e-46 189.5 248 49.2
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.0e-45 186.4 237 50.2
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 5.8e-45 184.9 248 48.4
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 9.9e-45 184.1 250 47.6
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.9e-45 184.1 250 47.2
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 9.9e-45 184.1 247 48.6
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.7e-44 183.3 240 48.3
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.7e-44 183.3 237 51.5
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 2.2e-44 183.0 247 48.6
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.2e-44 183.0 247 47.8
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 3.8e-44 182.2 242 48.3
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 4.9e-44 181.8 239 48.5
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 6.4e-44 181.4 250 48.4
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 6.4e-44 181.4 246 50.0
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.1e-43 180.6 241 48.1
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 2.4e-43 179.5 243 47.7
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 2.4e-43 179.5 258 47.3
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 3.2e-43 179.1 243 49.0
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 4.2e-43 178.7 240 50.8
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 4.2e-43 178.7 233 48.1
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 5.5e-43 178.3 253 47.0
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 7.1e-43 177.9 243 48.1
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 9.3e-43 177.6 249 47.8
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 9.3e-43 177.6 240 48.3
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.2e-42 177.2 243 46.9
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 1.6e-42 176.8 243 48.1
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.6e-42 176.8 240 48.3
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.1e-42 176.4 286 42.7
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 2.1e-42 176.4 240 45.4
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 2.1e-42 176.4 242 46.7
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 2.7e-42 176.0 241 46.1
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 3.5e-42 175.6 238 47.9
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 6.0e-42 174.9 248 48.4
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 7.9e-42 174.5 104 82.7
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 7.9e-42 174.5 249 45.0
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 7.9e-42 174.5 238 47.9
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 7.9e-42 174.5 233 48.9
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.0e-41 174.1 245 48.2
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.3e-41 173.7 252 47.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.3e-41 173.7 251 45.8
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.3e-41 173.7 262 46.9
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.8e-41 173.3 235 48.5
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 1.8e-41 173.3 233 48.1
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.3e-41 172.9 233 49.8
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.3e-41 172.9 235 48.5
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 2.3e-41 172.9 245 46.1
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.3e-41 172.9 240 47.1
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 2.3e-41 172.9 240 45.8
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 3.0e-41 172.6 252 46.4
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 3.0e-41 172.6 237 46.8
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 3.9e-41 172.2 240 45.8
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 5.1e-41 171.8 231 50.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 6.7e-41 171.4 239 46.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 6.7e-41 171.4 235 46.8
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.1e-40 170.6 240 47.5
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.9e-40 169.9 247 43.3
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 2.5e-40 169.5 235 46.4
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 2.5e-40 169.5 235 46.4
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.5e-40 169.5 239 44.8
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 2.5e-40 169.5 248 45.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 3.3e-40 169.1 239 44.8
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 4.3e-40 168.7 240 46.7
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.3e-40 168.7 242 45.9
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 5.6e-40 168.3 231 46.8
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 7.4e-40 167.9 258 44.2
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 7.4e-40 167.9 241 46.9
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 7.4e-40 167.9 250 44.8
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.3e-39 167.2 238 45.8
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.3e-39 167.2 239 45.2
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.3e-39 167.2 248 43.1
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.6e-39 166.8 245 44.9
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.6e-39 166.8 221 48.4
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.6e-39 166.8 252 43.3
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 2.8e-39 166.0 243 45.3
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.7e-39 165.6 245 45.3
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.7e-39 165.6 260 44.2
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 4.8e-39 165.2 263 43.7
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 6.2e-39 164.9 241 44.0
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 6.2e-39 164.9 252 44.0
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 6.2e-39 164.9 97 80.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 8.1e-39 164.5 239 45.2
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-38 164.1 232 47.0
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.4e-38 163.7 242 45.0
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.8e-38 163.3 243 45.3
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 9.0e-38 161.0 241 44.8
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.5e-37 160.2 103 73.8
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 5.8e-37 158.3 238 44.1
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 7.6e-37 157.9 246 43.9
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.6e-34 150.2 91 80.2
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 4.6e-34 148.7 91 78.0
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.0e-33 147.5 222 47.7
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 4.3e-32 142.1 91 74.7
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.8e-31 139.4 213 45.5
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 4.8e-31 138.7 311 36.7
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 8.2e-31 137.9 234 42.7
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.1e-30 137.5 94 71.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.0e-29 133.3 202 43.6
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.7e-28 130.2 92 66.3
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 8.4e-28 127.9 242 39.7
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 2.7e-26 122.9 91 63.7
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 6.1e-26 121.7 97 59.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.1e-24 117.5 223 39.5
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 5.7e-24 115.2 65 83.1
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 9.7e-24 114.4 73 74.0
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.0e-21 106.7 122 46.7
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.3e-20 104.0 94 55.3
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.1e-19 100.9 241 36.9
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.4e-19 100.5 240 35.8
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 3.0e-17 92.8 92 50.0
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.0e-16 90.1 90 52.2
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.7e-15 87.0 87 48.3
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 2.4e-14 83.2 190 37.9
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.4e-09 67.4 177 30.5
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 5.1e-09 65.5 217 31.8
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.3e-08 62.8 34 82.4
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.3e-07 60.8 78 51.3
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 6.3e-07 58.5 85 45.9
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.4e-06 56.6 38 68.4
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 4.1e-06 55.8 38 71.1
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 4.1e-06 55.8 38 71.1


User provided reference genes

Program Settings