Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 0.0e+00 1088.9 608 100.0
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 5.1e-252 874.4 613 79.8
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 5.8e-248 860.9 618 79.1
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 3.8e-247 858.2 618 77.8
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 4.8e-226 788.1 618 72.5
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 8.2e-226 787.3 618 72.5
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.7e-221 772.3 618 71.7
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.3e-207 726.9 704 63.8
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.6e-205 719.9 704 63.1
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 6.3e-202 708.0 704 62.6
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 5.0e-175 618.6 627 61.2
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 5.2e-172 608.6 620 59.2
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 2.2e-170 603.2 623 59.6
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 2.9e-170 602.8 623 57.8
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 2.1e-165 586.6 656 56.4
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 1.8e-164 583.6 628 57.3
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.8e-162 575.9 623 58.6
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 2.7e-160 569.7 611 57.0
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.1e-156 557.8 667 54.3
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 5.2e-156 555.4 628 55.9
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 1.2e-155 554.3 567 58.9
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 1.2e-155 554.3 628 55.4
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 2.3e-151 540.0 620 54.7
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 1.6e-149 533.9 656 53.5
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 2.4e-145 520.0 633 52.1
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 7.9e-144 515.0 636 52.8
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.1e-140 504.6 608 54.6
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 3.1e-140 503.1 608 54.6
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 9.0e-140 501.5 596 55.0
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 9.0e-140 501.5 639 51.8
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 7.6e-139 498.4 745 45.6
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 2.9e-138 496.5 679 48.6
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.9e-134 483.8 632 52.2
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 9.6e-134 481.5 642 50.5
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 2.1e-133 480.3 620 51.3
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.7e-130 470.7 606 51.5
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 6.5e-130 468.8 626 50.5
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 8.4e-130 468.4 630 49.8
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 4.6e-128 462.6 617 53.5
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 8.7e-127 458.4 629 49.3
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 8.7e-127 458.4 661 48.9
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.9e-126 457.2 609 50.4
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 3.3e-126 456.4 630 49.8
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 3.3e-126 456.4 719 45.1
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 5.7e-126 455.7 626 50.5
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 4.8e-125 452.6 684 46.3
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 4.1e-124 449.5 624 48.4
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.2e-122 443.7 623 48.6
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 2.9e-122 443.4 584 49.7
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 6.5e-122 442.2 655 47.9
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 3.2e-121 439.9 630 45.9
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 3.2e-121 439.9 671 47.1
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 6.1e-120 435.6 624 49.0
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 1.0e-119 434.9 625 47.2
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 1.5e-118 431.0 641 46.3
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 1.3e-117 427.9 627 46.9
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 2.2e-117 427.2 732 44.0
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 1.1e-116 424.9 625 46.4
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 5.0e-114 416.0 606 47.2
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 7.9e-112 408.7 645 45.0
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.3e-109 401.4 635 46.0
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 4.8e-109 399.4 634 45.3
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 8.2e-109 398.7 623 45.1
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 7.0e-108 395.6 622 45.2
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 5.5e-105 386.0 627 44.8
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 3.3e-102 376.7 628 44.3
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 4.4e-102 376.3 606 45.5
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 9.7e-102 375.2 624 44.2
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 2.8e-101 373.6 607 44.2
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 1.1e-100 371.7 617 42.6
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 1.4e-100 371.3 619 45.6
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 3.1e-100 370.2 615 44.2
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 4.1e-100 369.8 614 44.1
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 3.5e-99 366.7 630 44.4
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 4.5e-99 366.3 606 43.9
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 1.0e-98 365.2 605 44.8
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 2.2e-98 364.0 604 43.9
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 2.2e-98 364.0 604 43.9
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 2.2e-98 364.0 615 43.7
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 5.0e-98 362.8 634 46.1
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 5.5e-97 359.4 605 44.3
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 7.2e-97 359.0 652 43.6
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 2.7e-96 357.1 616 44.3
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.0e-95 355.1 658 43.5
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 1.4e-95 354.8 627 42.6
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 3.0e-95 353.6 608 43.8
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 6.7e-95 352.4 640 43.1
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 6.7e-95 352.4 607 42.8
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 2.0e-94 350.9 626 43.0
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 2.0e-91 340.9 648 42.9
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 1.3e-90 338.2 626 42.2
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.9e-89 334.3 609 41.7
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 3.2e-89 333.6 524 45.8
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 2.1e-88 330.9 520 46.9
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 1.4e-87 328.2 653 40.1
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 1.4e-87 328.2 600 40.5
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 1.8e-87 327.8 657 39.3
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 4.4e-86 323.2 615 41.6
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 8.3e-85 318.9 633 40.9
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 3.1e-84 317.0 633 42.0
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 2.9e-82 310.5 538 42.6
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 1.6e-75 288.1 596 38.9
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 1.6e-75 288.1 671 37.4
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 1.6e-75 288.1 781 35.0
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 5.9e-75 286.2 671 37.3
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 7.8e-75 285.8 369 49.1
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 3.8e-74 283.5 480 45.0
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 3.8e-74 283.5 606 41.4
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 1.5e-73 281.6 599 38.6
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 9.5e-73 278.9 587 41.7
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.6e-72 278.1 338 50.6
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 3.6e-72 276.9 575 38.3
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 3.7e-69 266.9 715 39.7
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 4.1e-68 263.5 609 36.5
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 4.1e-68 263.5 625 37.6
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 1.0e-66 258.8 581 38.9
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 3.0e-66 257.3 620 38.5
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 3.0e-66 257.3 583 36.9
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 5.0e-66 256.5 878 30.5
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 1.9e-65 254.6 399 43.1
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 9.5e-65 252.3 615 38.9
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 2.8e-64 250.8 706 37.4
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 2.0e-62 244.6 623 39.3
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 3.7e-61 240.4 646 36.4
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 3.2e-60 237.3 592 37.7
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 6.0e-59 233.0 192 69.3
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 7.8e-59 232.6 683 35.9
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 1.0e-58 232.3 623 34.8
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 1.6e-56 224.9 621 36.6
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 2.8e-56 224.2 618 38.5
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 3.6e-56 223.8 620 35.5
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 4.7e-56 223.4 621 36.4
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 4.7e-56 223.4 629 35.3
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 4.7e-56 223.4 616 36.0
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 8.1e-56 222.6 627 35.1
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 8.1e-56 222.6 627 35.1
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 8.1e-56 222.6 627 35.1
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 1.4e-55 221.9 630 37.9
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 3.1e-55 220.7 630 35.6
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 5.2e-55 219.9 604 36.6
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 6.8e-55 219.5 597 34.0
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 9.9e-54 215.7 623 34.0
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 2.9e-53 214.2 618 38.2
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 2.9e-53 214.2 586 34.0
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 5.4e-52 209.9 618 37.2
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 1.0e-50 205.7 628 35.4
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 1.3e-50 205.3 627 35.4
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.3e-50 205.3 617 35.2
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 2.5e-49 201.1 610 33.8
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 2.4e-47 194.5 580 35.0
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 5.2e-47 193.4 635 32.6
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 8.9e-47 192.6 596 33.6
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 1.5e-46 191.8 610 33.3
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 1.1e-39 169.1 641 30.3
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 4.9e-37 160.2 239 43.9
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 4.2e-36 157.1 578 33.2
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 4.9e-29 133.7 517 33.8
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 3.2e-28 131.0 433 32.8
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 1.3e-26 125.6 611 28.6
unitig_578.g16088 Utricularia gibba HOM05D004047 ORTHO05D004772 4.3e-25 120.6 406 30.8
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 1.0e-18 99.4 75 68.0
Lsat_1_v5_gn_8_51360 Lactuca sativa HOM05D004047 ORTHO05D004772 2.3e-18 98.2 264 33.3
CSS0030269 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D004772 3.4e-14 84.3 119 46.2
Aqoxy6G00312 Aquilegia oxysepala HOM05D000051 ORTHO05D031295 1.7e-13 82.0 276 32.2
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.7e-08 64.3 113 41.6
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 5.3e-07 60.5 65 55.4
Medtr1g023925 Medicago truncatula HOM05D004047 ORTHO05D004772 6.9e-07 60.1 56 60.7
HPP92_020925 Vanilla planifolia HOM05D004047 ORTHO05D004772 1.5e-06 58.9 124 31.5
Actinidia37974 Actinidia chinensis HOM05D004047 ORTHO05D004772 7.7e-06 56.6 65 47.7
SEGI_27290 Sequoiadendron giganteum HOM05D004047 ORTHO05D037350 7.7e-06 56.6 85 37.6


User provided reference genes

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