Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.2e-205 719.5 350 100.0
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 6.9e-169 597.4 349 83.1
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 1.0e-167 593.6 349 81.7
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 1.2e-160 570.1 349 77.7
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.6e-144 516.5 313 78.3
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.9e-143 512.3 313 77.0
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 2.5e-134 482.6 351 67.8
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 4.4e-131 471.9 357 65.0
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 1.9e-126 456.4 312 70.8
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 7.3e-126 454.5 353 62.9
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 9.5e-126 454.1 355 63.7
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 2.3e-124 449.5 312 68.9
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 2.6e-123 446.0 368 60.6
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.9e-121 439.9 338 65.4
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 2.7e-120 436.0 358 60.6
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 2.7e-120 436.0 341 62.2
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 6.0e-120 434.9 355 60.6
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 1.6e-117 426.8 358 60.6
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 7.5e-115 417.9 355 57.5
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 4.9e-114 415.2 350 60.0
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 4.1e-113 412.1 364 58.2
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 5.4e-113 411.8 298 65.8
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.6e-112 410.2 349 58.2
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.1e-112 409.8 346 58.7
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 2.1e-112 409.8 350 59.7
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 1.0e-111 407.5 351 58.4
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.3e-111 407.1 309 66.3
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.7e-111 406.8 359 57.1
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 3.0e-111 406.0 356 57.3
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.5e-110 403.7 303 64.7
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 1.9e-110 403.3 297 66.3
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.2e-109 400.6 343 57.4
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 2.1e-109 399.8 301 63.5
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 2.8e-109 399.4 328 59.5
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 3.6e-109 399.1 298 63.8
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 8.1e-109 397.9 364 56.6
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.1e-108 397.5 298 64.8
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 1.1e-108 397.5 333 58.0
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 3.1e-108 396.0 350 57.1
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 4.0e-108 395.6 310 61.0
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 5.2e-108 395.2 355 57.2
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 1.2e-107 394.0 299 61.9
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.2e-107 394.0 349 55.6
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.5e-107 393.7 304 60.9
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 2.0e-107 393.3 344 57.0
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 3.4e-107 392.5 354 57.6
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 4.4e-107 392.1 299 61.9
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 7.5e-107 391.3 307 61.2
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 7.5e-107 391.3 364 54.9
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.3e-106 390.6 338 59.2
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 2.2e-106 389.8 355 57.2
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 2.9e-106 389.4 343 55.4
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 4.9e-106 388.7 307 61.2
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 8.3e-106 387.9 343 56.9
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 1.4e-105 387.1 350 56.3
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 2.4e-105 386.3 355 54.6
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 4.1e-105 385.6 315 58.4
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 9.2e-105 384.4 343 55.4
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 1.6e-104 383.6 307 59.0
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.1e-104 383.3 352 55.4
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 2.7e-104 382.9 313 59.7
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 6.0e-104 381.7 341 55.7
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.3e-103 380.6 296 61.5
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.7e-103 380.2 354 53.7
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 2.3e-103 379.8 345 55.7
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 6.6e-103 378.3 300 59.7
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.1e-102 377.5 294 60.9
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 3.3e-102 375.9 320 56.9
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 5.6e-102 375.2 297 59.9
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 7.3e-102 374.8 358 53.9
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 2.1e-101 373.2 274 66.4
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 1.1e-100 370.9 300 62.3
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.1e-100 370.9 301 62.5
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 2.2e-98 363.2 303 57.4
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 2.9e-98 362.8 298 58.4
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 4.9e-98 362.1 300 59.7
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 6.4e-98 361.7 358 53.9
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 4.6e-96 355.5 315 55.6
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.8e-96 354.8 350 53.4
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 1.0e-95 354.4 246 67.9
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 9.6e-94 347.8 240 67.9
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 6.2e-93 345.1 280 62.1
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.4e-92 344.0 304 56.2
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 3.1e-92 342.8 296 55.4
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 4.0e-92 342.4 278 58.3
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.3e-90 337.4 302 56.0
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.7e-88 329.7 295 54.6
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.8e-88 328.2 269 59.9
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 2.3e-87 326.6 292 55.1
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-86 324.3 269 59.1
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 3.3e-86 322.8 237 66.2
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 1.6e-85 320.5 424 43.6
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.6e-83 313.2 302 51.3
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 6.7e-79 298.5 336 44.9
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 1.6e-77 293.9 302 50.3
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 4.9e-74 282.3 308 51.0
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 6.2e-69 265.4 187 67.9
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.8e-60 237.3 277 47.3
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 1.3e-58 231.1 303 44.6
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 2.2e-58 230.3 235 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 5.1e-55 219.2 310 41.9
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 5.7e-54 215.7 313 41.5
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 1.2e-51 208.0 303 41.3
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 4.7e-48 196.1 167 59.9
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.9e-42 176.8 387 33.9
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 8.5e-42 175.3 242 42.1
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.5e-33 147.9 189 41.8
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 1.2e-27 128.3 106 54.7
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.7e-26 124.4 173 41.0
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 3.8e-26 123.2 215 35.3
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.1e-25 121.7 327 31.5
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.9e-25 120.9 107 54.2
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 8.3e-21 105.5 125 45.6
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 7.2e-17 92.4 112 43.8
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 1.5e-14 84.7 54 79.6


User provided reference genes

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