Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 1.6e-73 279.3 136 100.0
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 3.6e-65 251.5 136 90.4
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.2e-65 250.8 136 90.4
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 7.6e-63 243.8 136 88.2
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 4.6e-60 234.6 134 84.3
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 2.5e-58 228.8 138 85.5
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 4.0e-56 221.5 136 81.6
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 7.1e-53 210.7 134 73.9
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 1.2e-52 209.9 134 73.9
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.2e-52 209.9 136 76.5
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.2e-52 209.9 140 76.4
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 1.6e-52 209.5 134 74.6
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 4.6e-52 208.0 138 76.8
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 7.8e-52 207.2 140 73.6
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 1.0e-51 206.8 137 78.1
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.3e-51 205.7 141 78.7
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 2.3e-51 205.7 141 73.0
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 6.6e-51 204.1 139 78.4
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 8.7e-51 203.8 145 73.8
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 8.7e-51 203.8 145 73.8
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 8.7e-51 203.8 137 75.2
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 1.5e-50 203.0 145 73.8
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 1.5e-50 203.0 145 73.8
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 1.5e-50 203.0 145 73.8
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 1.5e-50 203.0 149 73.2
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 1.9e-50 202.6 134 73.1
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 2.5e-50 202.2 140 74.3
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 3.3e-50 201.8 132 75.8
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 3.3e-50 201.8 137 74.5
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 4.3e-50 201.4 138 75.4
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 7.3e-50 200.7 149 71.1
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 9.6e-50 200.3 142 71.8
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 9.6e-50 200.3 138 73.9
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 2.8e-49 198.7 134 73.9
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 3.6e-49 198.4 143 71.3
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 3.6e-49 198.4 143 71.3
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 3.6e-49 198.4 143 71.3
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 4.8e-49 198.0 147 70.1
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 4.8e-49 198.0 138 72.5
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 6.2e-49 197.6 146 68.5
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 6.2e-49 197.6 140 71.4
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 6.2e-49 197.6 140 71.4
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 8.1e-49 197.2 136 72.8
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 1.1e-48 196.8 137 71.5
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 1.1e-48 196.8 137 71.5
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 1.8e-48 196.1 145 71.0
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 2.4e-48 195.7 143 70.6
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 2.4e-48 195.7 143 70.6
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 2.4e-48 195.7 139 74.8
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 3.1e-48 195.3 149 67.1
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 4.0e-48 194.9 136 69.1
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 4.0e-48 194.9 147 68.0
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 4.0e-48 194.9 146 68.5
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 9.0e-48 193.7 145 66.9
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 1.2e-47 193.4 136 69.1
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 1.2e-47 193.4 137 73.0
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 1.5e-47 193.0 110 84.5
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 2.0e-47 192.6 136 69.1
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 2.6e-47 192.2 135 71.1
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 2.6e-47 192.2 135 71.1
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 3.4e-47 191.8 134 70.9
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 4.5e-47 191.4 134 70.9
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 1.3e-46 189.9 110 80.9
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 1.7e-46 189.5 107 83.2
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 2.9e-46 188.7 133 71.4
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 2.9e-46 188.7 143 69.9
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 3.8e-46 188.3 137 71.5
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 4.9e-46 188.0 139 69.8
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 4.9e-46 188.0 137 68.6
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 6.4e-46 187.6 143 70.6
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 8.4e-46 187.2 141 68.8
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 1.9e-45 186.0 102 87.3
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 3.2e-45 185.3 138 65.9
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 3.2e-45 185.3 134 69.4
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 4.2e-45 184.9 134 69.4
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 7.1e-45 184.1 137 69.3
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.6e-44 183.0 134 67.9
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 2.1e-44 182.6 140 67.9
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 6.0e-44 181.0 139 66.2
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.3e-43 179.9 138 65.9
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 3.9e-43 178.3 139 66.2
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 3.9e-43 178.3 159 59.7
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 1.1e-42 176.8 140 66.4
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.1e-42 176.8 135 66.7
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.5e-42 176.4 136 67.6
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 1.5e-42 176.4 134 63.4
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.9e-42 176.0 135 67.4
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 2.5e-42 175.6 140 66.4
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 3.3e-42 175.3 136 66.9
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 4.3e-42 174.9 136 66.9
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 9.6e-42 173.7 138 67.4
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 1.6e-41 172.9 138 66.7
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 1.6e-41 172.9 140 61.4
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 2.1e-41 172.6 138 64.5
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 4.8e-41 171.4 127 64.6
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 4.8e-41 171.4 133 65.4
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 8.1e-41 170.6 136 65.4
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 1.1e-40 170.2 100 80.0
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 6.9e-40 167.5 130 66.2
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 9.0e-40 167.2 125 65.6
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 9.0e-40 167.2 136 64.7
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 3.4e-39 165.2 110 69.1
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 1.9e-37 159.5 106 71.7
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 4.2e-37 158.3 112 69.6
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.5e-36 155.2 104 69.2
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 6.7e-35 151.0 140 57.1
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 6.7e-35 151.0 140 57.1
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 8.7e-35 150.6 96 72.9
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 3.3e-34 148.7 124 57.3
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 7.4e-34 147.5 104 66.3
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.7e-33 145.2 104 61.5
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 4.8e-33 144.8 103 65.0
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 6.9e-32 141.0 76 93.4
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 2.9e-30 135.6 129 52.7
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 1.0e-27 127.1 76 78.9
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 5.1e-27 124.8 104 56.7
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 8.7e-27 124.0 100 56.0
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.9e-26 122.9 75 81.3
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 2.5e-26 122.5 109 52.3
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 9.7e-26 120.6 109 51.4
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.6e-25 119.8 75 80.0
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 1.4e-21 106.7 53 84.9
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 7.2e-21 104.4 96 51.0
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 1.6e-20 103.2 120 45.0
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 3.7e-17 92.0 58 77.6
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 3.9e-11 72.0 58 67.2
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 1.1e-08 63.9 55 56.4


User provided reference genes

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