Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 3.0e-126 455.3 245 100.0
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 4.3e-101 371.7 248 83.1
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 6.7e-94 347.8 248 79.8
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.5e-93 345.9 248 79.0
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 3.7e-92 342.0 257 77.0
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 3.5e-74 282.3 242 66.5
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.5e-69 266.9 253 61.7
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 5.7e-69 265.0 250 64.4
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 5.7e-69 265.0 242 62.8
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 2.2e-68 263.1 250 60.8
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 2.8e-68 262.7 204 68.6
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 2.8e-68 262.7 252 62.7
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 3.7e-68 262.3 244 61.9
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 4.8e-68 261.9 244 60.7
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.8e-67 260.0 231 64.5
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 9.1e-67 257.7 247 61.9
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 9.1e-67 257.7 249 60.2
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 2.7e-66 256.1 243 63.8
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 2.7e-66 256.1 241 63.5
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 2.2e-65 253.1 219 63.9
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.9e-65 252.7 197 67.0
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 6.5e-65 251.5 219 63.0
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 6.5e-65 251.5 239 62.8
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 2.5e-64 249.6 245 58.4
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 3.2e-64 249.2 234 59.4
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 5.5e-64 248.4 248 61.3
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 1.6e-63 246.9 194 68.6
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 1.0e-62 244.2 247 58.3
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.4e-62 243.8 237 56.1
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 3.0e-62 242.7 250 58.8
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 5.7e-61 238.4 250 56.4
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.3e-60 237.3 248 55.2
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 2.2e-60 236.5 216 63.4
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 2.2e-60 236.5 199 65.3
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 2.8e-60 236.1 193 65.8
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 4.8e-60 235.3 195 68.2
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 2.4e-59 233.0 250 54.4
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 2.4e-59 233.0 203 62.1
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 2.4e-59 233.0 246 55.7
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 4.1e-59 232.3 243 57.6
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 9.1e-59 231.1 192 64.6
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.6e-58 230.3 248 57.3
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 3.5e-58 229.2 192 64.1
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.3e-57 227.3 232 56.9
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 1.3e-57 227.3 193 62.7
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 1.7e-57 226.9 192 63.5
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.7e-57 226.9 247 57.1
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.7e-57 226.9 193 61.1
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 2.9e-57 226.1 193 62.7
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 6.5e-57 224.9 243 53.9
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 8.6e-57 224.6 210 62.4
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 1.1e-56 224.2 192 66.1
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 1.5e-56 223.8 221 60.6
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 1.5e-56 223.8 192 64.1
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.5e-56 223.8 215 61.9
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.9e-56 223.4 194 62.9
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.9e-56 223.4 192 65.6
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 4.2e-56 222.2 243 53.5
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 4.7e-55 218.8 193 63.2
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 4.7e-55 218.8 185 61.1
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 4.7e-55 218.8 207 59.4
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 4.7e-55 218.8 248 56.0
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 6.1e-55 218.4 193 61.7
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 8.0e-55 218.0 194 61.9
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 2.3e-54 216.5 163 68.7
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 4.0e-54 215.7 240 54.6
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 4.0e-54 215.7 193 61.7
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 4.0e-54 215.7 304 48.7
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 1.2e-53 214.2 176 65.9
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.2e-53 214.2 247 52.2
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 1.5e-53 213.8 194 60.3
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 9.8e-53 211.1 193 60.6
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 9.8e-53 211.1 193 60.6
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 1.3e-52 210.7 197 58.9
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.7e-52 210.3 244 51.2
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 4.9e-52 208.8 193 59.6
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 8.3e-52 208.0 193 59.1
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 1.4e-51 207.2 193 59.6
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.4e-51 207.2 193 60.1
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 1.4e-51 207.2 191 62.3
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 5.0e-49 198.7 242 52.1
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 5.2e-46 188.7 180 57.2
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 8.9e-46 188.0 186 55.4
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 7.5e-45 184.9 169 61.5
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.6e-42 177.2 203 48.3
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 1.0e-41 174.5 181 55.2
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.3e-41 174.1 172 52.9
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.7e-41 173.7 237 45.1
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 1.1e-40 171.0 223 45.7
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 7.3e-40 168.3 190 52.1
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 5.2e-38 162.2 117 70.1
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 6.4e-36 155.2 195 50.8
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 1.2e-34 151.0 187 47.1
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 1.7e-33 147.1 91 85.7
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 8.6e-33 144.8 218 47.2
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 4.3e-32 142.5 131 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 9.5e-32 141.4 169 45.0
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 4.0e-30 136.0 166 45.8
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 5.2e-30 135.6 96 71.9
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 9.2e-27 124.8 89 70.8
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 1.4e-22 110.9 109 59.6
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 7.6e-21 105.1 98 60.2
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 4.9e-20 102.4 104 52.9
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.0e-17 94.7 225 33.3
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 3.9e-09 66.2 53 60.4
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 1.3e-07 61.2 36 86.1
Ah.05g167420 Amaranthus hybridus HOM05D007221 ORTHO05D009204 1.4e-06 57.8 42 64.3


User provided reference genes

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