Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 8.6e-179 630.2 313 100.0
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 1.1e-162 576.6 340 86.2
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 1.6e-153 546.2 330 83.6
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 2.9e-134 482.3 334 74.6
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 2.7e-132 475.7 337 73.3
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 2.7e-132 475.7 332 73.5
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 3.6e-132 475.3 338 73.1
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.8e-131 473.0 334 72.8
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 3.0e-131 472.2 332 73.5
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 3.0e-131 472.2 334 74.0
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 8.8e-131 470.7 334 73.1
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 1.9e-130 469.5 334 72.5
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 7.4e-130 467.6 332 72.6
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 1.7e-129 466.5 332 73.8
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 6.3e-129 464.5 331 72.5
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 3.8e-126 455.3 333 70.9
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 3.8e-126 455.3 330 71.5
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 1.1e-125 453.8 333 71.2
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 1.1e-125 453.8 315 71.4
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 1.4e-125 453.4 331 70.7
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 3.2e-125 452.2 334 69.5
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 9.4e-125 450.7 334 69.5
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.2e-124 450.3 333 71.2
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 3.6e-124 448.7 324 71.6
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 6.1e-124 448.0 305 73.4
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 7.9e-124 447.6 334 68.6
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 7.9e-124 447.6 331 69.2
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.0e-123 447.2 334 68.6
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 1.8e-123 446.4 335 68.1
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 5.1e-123 444.9 331 70.4
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 5.1e-123 444.9 331 68.9
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 5.1e-123 444.9 333 68.2
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 6.7e-123 444.5 331 69.8
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 2.0e-122 443.0 332 68.4
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 2.0e-122 443.0 335 67.5
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 5.7e-122 441.4 334 69.2
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 9.7e-122 440.7 334 69.2
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 2.2e-121 439.5 329 67.5
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 2.8e-121 439.1 331 68.3
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 1.1e-120 437.2 322 69.3
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 4.1e-120 435.3 330 67.3
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 1.2e-119 433.7 318 68.6
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 2.0e-119 433.0 317 70.0
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 3.4e-119 432.2 328 67.7
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 4.5e-119 431.8 337 65.9
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 5.9e-119 431.4 320 68.4
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 5.9e-119 431.4 333 66.4
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 1.0e-118 430.6 336 65.8
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 1.0e-118 430.6 335 68.4
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 1.3e-118 430.3 330 66.1
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 2.2e-118 429.5 333 66.4
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 2.9e-118 429.1 330 68.2
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 6.5e-118 427.9 320 68.8
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 1.1e-117 427.2 317 68.8
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.4e-117 426.8 332 67.2
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 1.9e-117 426.4 319 68.3
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.6e-116 423.3 332 66.9
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 2.7e-116 422.5 317 67.5
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 2.7e-116 422.5 317 67.5
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 3.6e-116 422.2 318 67.6
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 3.6e-116 422.2 325 65.8
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 3.6e-116 422.2 335 66.3
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 6.1e-116 421.4 317 67.5
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 6.1e-116 421.4 317 67.5
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 6.1e-116 421.4 317 67.5
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 1.4e-115 420.2 338 65.1
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 5.2e-115 418.3 317 66.9
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 6.7e-115 417.9 321 66.4
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 1.1e-114 417.2 322 64.9
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 1.5e-114 416.8 319 66.5
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 2.0e-114 416.4 338 64.2
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 2.6e-114 416.0 319 66.8
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 4.4e-114 415.2 331 64.7
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 1.3e-113 413.7 335 65.4
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 1.7e-113 413.3 337 63.5
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 1.7e-113 413.3 335 65.7
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 1.4e-112 410.2 320 65.0
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 2.4e-112 409.5 334 65.6
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 4.5e-111 405.2 314 65.9
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 2.9e-110 402.5 306 69.6
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.2e-109 398.7 326 62.3
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 1.8e-107 393.3 335 60.6
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 4.8e-105 385.2 343 58.9
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 9.1e-104 380.9 320 61.6
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.2e-103 380.6 319 62.4
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 1.6e-103 380.2 317 60.6
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 3.8e-102 375.6 320 60.6
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 2.8e-97 359.4 333 58.0
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 4.2e-93 345.5 307 57.3
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 6.1e-92 341.7 323 57.6
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 7.0e-88 328.2 307 54.4
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 4.5e-87 325.5 318 54.4
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 8.0e-84 314.7 291 58.1
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 7.8e-79 298.1 213 72.3
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 5.2e-75 285.4 207 70.5
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.4e-72 277.3 304 49.7
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 7.0e-72 275.0 306 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 2.1e-71 273.5 305 48.5
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.9e-69 266.9 251 57.8
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 1.1e-67 261.2 199 64.8
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 6.8e-67 258.5 200 65.5
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.1e-59 234.6 129 84.5
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.9e-56 223.8 161 71.4
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 5.4e-48 195.7 165 58.8
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 3.5e-47 193.0 135 69.6
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 1.3e-46 191.0 178 54.5
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 2.3e-46 190.3 266 43.6
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 3.9e-46 189.5 144 67.4
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 7.6e-42 175.3 90 87.8
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 4.9e-41 172.6 129 72.1
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.1e-37 161.4 129 66.7
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.3e-36 157.9 196 50.0
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.7e-25 120.9 125 55.2
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.1e-22 109.4 106 52.8
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 3.4e-18 96.7 217 31.3
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 1.5e-13 81.3 189 33.9
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 3.8e-09 66.6 100 41.0
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 5.5e-08 62.8 40 77.5


User provided reference genes

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