Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 0.0e+00 1263.8 646 100.0
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 6.3e-309 1063.5 650 84.0
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 4.8e-301 1037.3 652 82.8
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 3.4e-286 988.0 620 82.7
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 9.8e-278 959.9 717 71.3
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.1e-273 946.4 717 70.4
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.8e-271 939.1 732 69.1
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 9.6e-257 890.2 590 78.5
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.6e-256 888.3 651 72.8
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 8.1e-256 887.1 651 72.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.9e-253 878.6 651 71.7
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.1e-239 833.6 664 65.7
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 2.6e-238 828.9 665 65.4
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 9.9e-238 827.0 659 66.0
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.3e-237 826.6 664 65.1
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 7.9e-235 817.4 649 65.9
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.0e-234 817.0 667 65.4
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 2.3e-234 815.8 652 66.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 5.1e-234 814.7 675 64.6
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.3e-232 810.1 638 67.4
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.8e-232 808.1 663 65.2
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 4.8e-232 808.1 655 65.3
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 8.1e-232 807.4 651 65.0
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 3.8e-229 798.5 679 63.9
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 8.7e-226 787.3 662 63.7
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 3.7e-224 781.9 656 63.9
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.1e-223 780.4 653 62.3
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 9.0e-223 777.3 662 63.0
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.1e-220 770.4 668 62.6
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.4e-220 770.0 654 63.6
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.2e-220 768.8 595 67.6
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.2e-220 768.8 660 62.9
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 7.1e-220 767.7 597 66.8
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.2e-219 766.9 659 62.1
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.2e-219 766.9 659 62.1
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 3.5e-219 765.4 661 61.1
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.3e-218 763.5 597 67.3
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.5e-217 760.0 663 61.7
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 4.3e-217 758.4 660 62.4
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 3.7e-216 755.4 657 60.7
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 8.2e-216 754.2 662 61.9
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 2.4e-215 752.7 649 62.2
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 3.1e-215 752.3 661 60.5
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 4.1e-215 751.9 649 61.8
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 2.6e-214 749.2 656 63.0
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 6.1e-211 738.0 662 60.1
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 7.9e-211 737.6 656 60.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.8e-210 736.5 668 59.4
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 2.0e-209 733.0 657 61.8
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 4.1e-207 725.3 685 59.7
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.0e-206 723.0 646 60.5
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 4.5e-206 721.8 580 65.3
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.9e-205 719.2 664 59.2
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.8e-205 718.8 666 59.8
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 7.9e-203 711.1 592 63.2
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 5.1e-202 708.4 689 58.3
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 5.1e-202 708.4 653 59.0
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.7e-200 703.4 673 58.2
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.1e-199 700.7 597 62.5
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.4e-199 700.3 655 59.2
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 2.4e-199 699.5 657 58.0
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 2.4e-199 699.5 583 62.8
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.0e-199 698.0 660 59.5
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.6e-198 696.0 637 59.8
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 4.5e-198 695.3 658 57.6
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.5e-198 695.3 586 62.1
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 7.7e-198 694.5 665 58.5
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.5e-196 690.3 655 58.9
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 2.3e-194 682.9 655 58.8
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.6e-193 679.5 660 58.2
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 9.7e-193 677.6 645 58.8
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 4.8e-192 675.2 669 56.4
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 6.3e-192 674.9 660 57.9
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 8.2e-192 674.5 672 57.0
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 8.2e-192 674.5 656 57.2
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 7.0e-191 671.4 636 57.9
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.2e-187 660.6 662 56.5
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 6.1e-187 658.3 639 58.7
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.0e-186 656.0 672 56.1
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 8.8e-186 654.4 585 58.8
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 7.7e-182 641.3 492 66.3
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 6.5e-181 638.3 597 58.1
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 6.5e-181 638.3 519 62.4
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.5e-180 637.1 620 57.3
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 4.2e-180 635.6 666 52.1
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.6e-179 633.6 651 55.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.7e-179 632.9 552 59.6
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 6.1e-179 631.7 651 54.7
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 8.0e-179 631.3 653 54.1
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 8.0e-179 631.3 734 50.0
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 1.4e-178 630.6 652 53.8
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 4.0e-178 629.0 734 49.6
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 3.4e-177 625.9 652 53.5
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.3e-176 624.0 641 54.8
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 2.2e-176 623.2 635 55.4
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.2e-176 623.2 640 54.5
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 8.3e-176 621.3 640 54.4
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 2.4e-175 619.8 653 53.6
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.1e-175 619.4 665 52.9
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.2e-174 617.5 653 53.3
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.2e-174 617.5 609 56.3
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.3e-173 614.0 538 60.2
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 4.2e-172 609.0 637 52.9
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.6e-171 607.1 443 70.2
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 4.7e-171 605.5 658 53.8
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-170 604.4 650 54.0
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.3e-170 603.2 627 54.4
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 3.7e-168 595.9 650 51.8
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 8.6e-165 584.7 660 53.2
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.5e-164 583.2 663 49.8
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.6e-163 580.5 644 51.1
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.7e-160 570.5 567 55.9
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 8.6e-157 558.1 622 49.2
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 6.2e-155 552.0 572 53.8
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 4.0e-154 549.3 569 53.6
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 2.9e-144 516.5 634 47.8
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.9e-140 503.8 630 46.7
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 8.9e-138 495.0 647 46.5
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.4e-137 493.0 657 45.2
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 7.1e-135 485.3 634 47.8
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 2.0e-121 440.7 638 42.2
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 7.1e-119 432.2 636 41.5
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 7.7e-97 359.0 386 52.1
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 5.7e-92 342.8 564 38.5
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 4.1e-90 336.7 487 40.7
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 6.9e-90 335.9 594 36.7
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 9.1e-90 335.5 238 67.6
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-87 328.6 315 56.5
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.2e-87 327.0 560 36.4
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 8.8e-85 318.9 220 69.1
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.1e-84 318.5 415 42.4
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 9.4e-71 272.3 344 47.7
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 2.0e-49 201.4 125 76.8
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 2.3e-45 188.0 250 45.6
Cpa.g.sc64.72 Carica papaya HOM05D005308 ORTHO05D006494 4.5e-12 77.4 142 41.5
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 3.0e-08 64.7 100 34.0
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 5.1e-08 63.9 64 51.6
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 6.7e-08 63.5 139 40.3


User provided reference genes

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