Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 2.1e-129 465.7 229 100.0
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 8.7e-128 460.3 229 99.1
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.6e-126 456.1 229 98.3
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 97.4
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 3.6e-126 454.9 229 97.4
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.7e-126 454.5 226 98.2
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.7e-126 454.5 226 98.2
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.7e-126 454.5 229 96.9
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 6.2e-126 454.1 229 97.4
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.1e-125 453.4 229 97.4
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.8e-125 452.6 226 97.8
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.8e-125 452.6 229 97.4
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.8e-125 452.6 229 96.9
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.4e-125 452.2 229 96.5
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 5.3e-125 451.1 229 96.5
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 9.0e-125 450.3 229 96.1
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 9.0e-125 450.3 229 96.1
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.0e-124 449.1 227 96.9
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 96.5
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 95.6
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 94.8
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 94.8
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 9.9e-124 446.8 227 95.2
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 9.9e-124 446.8 227 95.2
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 95.6
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 94.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 95.2
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 94.3
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 94.3
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 93.9
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 95.2
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 3.8e-123 444.9 227 95.2
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 95.6
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 94.8
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 94.3
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 94.8
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.4
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 94.8
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 95.6
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.4
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 94.8
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.4e-122 442.2 228 94.7
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 93.9
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 94.3
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 93.4
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 94.3
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 94.7
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 93.9
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 94.3
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.4
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 6.6e-120 434.1 229 92.6
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.9e-119 432.6 229 91.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 4.3e-119 431.4 227 92.1
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.3e-119 431.4 227 92.1
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 4.3e-119 431.4 220 94.5
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.3e-119 430.6 229 93.4
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.6e-118 429.5 227 92.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.1e-118 429.1 229 91.7
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.1e-118 429.1 228 91.7
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 2.8e-118 428.7 228 91.7
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.6e-118 428.3 227 90.3
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 6.2e-118 427.6 227 90.3
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 91.3
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.4e-117 426.4 229 90.4
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.5e-116 422.9 229 90.8
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 3.4e-116 421.8 229 90.4
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 5.8e-116 421.0 227 90.7
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.9e-115 418.7 227 88.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.0
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.9
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.9
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.9
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.9
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.9
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 92.1
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 89.4
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.4e-114 415.6 229 89.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.2e-114 415.2 229 86.5
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 9.3e-114 413.7 229 86.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 88.1
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.2e-113 413.3 226 87.2
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 3.5e-113 411.8 226 87.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 88.1
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 87.7
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.0e-112 410.2 236 86.4
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.3e-112 409.8 227 87.2
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 1.8e-112 409.5 227 87.2
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 87.2
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 86.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 86.8
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 85.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 7.4e-111 404.1 228 85.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.3e-110 403.3 254 80.3
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 8.1e-110 400.6 227 84.6
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.1e-109 400.2 204 96.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 1.7e-107 392.9 203 95.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.7e-107 392.9 202 94.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.2e-106 388.7 229 85.2
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 3.5e-105 385.2 227 79.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.1e-103 380.2 201 93.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.6e-102 376.3 229 79.0
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.7e-102 375.2 229 76.9
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.7e-102 375.2 229 76.9
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 4.8e-102 374.8 210 84.3
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 4.0e-101 371.7 190 97.4
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 5.3e-101 371.3 191 96.3
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 6.9e-101 370.9 227 75.8
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.0e-100 369.4 233 82.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 2.6e-100 369.0 190 95.3
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 3.8e-99 365.2 200 89.5
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 3.2e-98 362.1 219 83.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 4.2e-98 361.7 250 75.2
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 1.8e-96 356.3 185 96.2
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.0e-96 355.5 191 91.1
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 6.7e-96 354.4 227 77.1
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.5e-95 353.2 187 93.6
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 9.7e-95 350.5 227 78.0
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 5.9e-92 341.3 226 70.8
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 2.2e-91 339.3 185 88.6
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 3.8e-91 338.6 226 75.2
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 6.9e-85 317.8 162 95.7
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 1.0e-83 313.9 164 93.9
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 9.4e-82 307.4 355 50.4
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.5e-76 288.5 160 86.9
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.1e-69 265.8 160 77.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.5e-60 235.7 120 93.3
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.4e-58 227.6 131 80.9
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.8e-56 223.4 154 68.2
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.6e-36 155.6 140 58.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.6e-28 129.0 69 89.9
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.7e-22 109.4 62 77.4
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.3e-19 100.9 124 50.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 4.3e-18 95.9 152 41.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.0e-15 87.0 83 59.0
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 69.2
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.3e-11 74.3 49 73.5
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.7e-11 73.9 79 49.4
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 4.3e-10 69.3 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

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