Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 6.7e-122 440.7 215 100.0
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.6e-102 375.6 207 87.4
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 9.4e-92 340.5 206 82.0
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 2.7e-91 339.0 206 82.0
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 2.6e-89 332.4 198 83.3
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 4.7e-83 311.6 203 71.9
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 4.0e-82 308.5 201 72.6
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 5.7e-81 304.7 174 87.9
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 7.5e-81 304.3 202 70.8
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 8.2e-80 300.8 202 70.8
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 4.1e-79 298.5 202 70.8
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.2e-78 297.0 202 71.3
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.0e-78 296.2 202 72.3
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 5.9e-78 294.7 202 71.3
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.7e-77 293.1 205 71.7
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 6.5e-77 291.2 201 69.7
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 6.5e-77 291.2 206 69.9
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 8.5e-77 290.8 204 71.1
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.9e-76 289.7 202 70.3
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 9.4e-76 287.3 202 68.3
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.6e-75 286.6 205 69.8
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 2.1e-75 286.2 202 70.8
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.1e-75 286.2 204 69.1
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 2.7e-75 285.8 205 69.3
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 3.6e-75 285.4 204 70.1
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.0e-74 283.9 205 68.8
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 1.0e-74 283.9 205 67.8
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.4e-74 283.5 205 70.2
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 1.4e-74 283.5 202 67.8
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 5.2e-74 281.6 202 66.3
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 6.8e-74 281.2 202 68.8
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 3.4e-73 278.9 203 69.5
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 4.4e-73 278.5 203 68.5
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 5.7e-73 278.1 205 69.3
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 7.5e-73 277.7 190 67.4
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.8e-71 273.1 201 66.7
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.4e-71 272.7 203 68.0
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 5.4e-71 271.6 193 68.9
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 9.1e-71 270.8 206 65.5
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 3.5e-70 268.9 202 65.3
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 2.2e-69 266.2 224 63.8
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 5.0e-69 265.0 197 67.5
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 6.5e-69 264.6 204 64.7
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 4.2e-68 261.9 203 65.0
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 5.5e-68 261.5 204 64.7
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 2.7e-67 259.2 201 62.2
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 3.6e-67 258.8 203 66.0
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 3.6e-67 258.8 203 66.0
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 4.7e-67 258.5 201 61.7
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.0e-66 257.3 219 61.6
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 1.0e-66 257.3 205 64.4
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 1.4e-66 256.9 202 62.9
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 1.4e-66 256.9 203 65.5
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.8e-66 256.5 201 62.2
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 1.8e-66 256.5 201 62.7
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 4.0e-66 255.4 206 65.0
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 4.0e-66 255.4 204 62.7
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 5.2e-66 255.0 201 62.2
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 5.2e-66 255.0 206 64.6
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 6.8e-66 254.6 202 62.9
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 6.8e-66 254.6 202 62.9
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.2e-65 253.8 206 65.5
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 2.0e-65 253.1 202 61.9
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 2.6e-65 252.7 205 62.9
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 3.4e-65 252.3 201 62.7
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 5.7e-65 251.5 213 62.4
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 7.5e-65 251.1 211 62.1
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.3e-64 250.4 199 62.3
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.3e-64 250.4 196 67.3
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.3e-64 250.4 219 60.3
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 2.2e-64 249.6 211 62.1
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 2.8e-64 249.2 199 61.8
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 3.7e-64 248.8 205 62.9
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 4.9e-64 248.4 195 65.1
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 8.3e-64 247.7 205 62.4
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.2e-62 243.8 215 59.5
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 2.0e-62 243.0 199 63.8
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 3.5e-62 242.3 210 59.0
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.0e-61 240.7 201 62.2
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 1.3e-61 240.4 202 61.4
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.3e-61 240.4 205 59.5
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.5e-60 236.9 213 59.6
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.5e-60 236.1 212 57.5
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 7.3e-60 234.6 200 60.5
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 7.3e-60 234.6 211 57.8
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.2e-59 233.8 198 60.6
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.4e-58 230.3 205 58.0
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.4e-58 230.3 198 59.6
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 3.0e-58 229.2 205 58.5
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 6.8e-58 228.0 200 57.5
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.2e-57 227.3 202 57.9
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.2e-57 227.3 202 57.9
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 3.4e-57 225.7 156 74.4
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 8.3e-56 221.1 209 55.5
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 7.0e-55 218.0 177 61.6
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.6e-54 216.9 193 60.6
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 1.6e-54 216.9 227 52.9
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 5.6e-52 208.4 208 53.4
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 2.3e-50 203.0 172 64.0
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 6.8e-50 201.4 156 64.1
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 6.6e-45 184.9 172 57.6
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 8.6e-45 184.5 158 61.4
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.1e-43 179.9 157 60.5
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 1.1e-42 177.6 117 71.8
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 1.2e-38 164.1 120 63.3
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.1e-38 163.3 198 46.5
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.0e-37 161.0 112 71.4
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 1.0e-37 161.0 233 41.2
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.7e-37 160.2 208 45.2
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 2.5e-36 156.4 233 39.9
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 8.9e-34 147.9 153 50.3
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 2.5e-28 129.8 113 53.1
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 8.1e-27 124.8 126 52.4
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.9e-21 105.9 127 48.8
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 5.1e-21 105.5 120 50.8
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.1e-20 104.4 64 76.6
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 7.1e-15 85.1 58 74.1
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 4.6e-14 82.4 48 75.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 4.0e-10 69.3 148 34.5
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 4.9e-08 62.4 73 39.7
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.4e-07 60.8 76 38.2
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 2.4e-07 60.1 98 37.8
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.5e-07 58.9 68 47.1
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 1.6e-06 57.4 73 34.2


User provided reference genes

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