Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.2e-129 465.7 240 100.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.6e-111 406.4 241 87.1
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.1e-109 400.2 241 85.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.0e-107 393.7 241 84.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.8e-107 392.9 243 82.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.7e-106 387.9 243 81.9
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.8e-104 382.9 243 81.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.1e-92 342.8 240 72.9
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.2e-91 338.2 240 73.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 7.5e-90 334.3 240 70.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.0e-87 326.2 242 69.4
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.5e-87 325.5 246 69.9
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.7e-86 323.2 246 68.7
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.9e-85 319.7 241 66.8
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 9.5e-85 317.4 241 66.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 9.5e-85 317.4 241 66.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.2e-84 317.0 241 68.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.6e-84 316.6 247 67.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.6e-84 316.6 247 66.4
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.8e-84 315.8 225 73.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.0e-84 314.3 245 68.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 5.2e-83 311.6 232 71.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 6.8e-83 311.2 245 68.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.2e-82 310.5 249 64.3
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.4e-82 308.5 242 65.7
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.8e-82 307.4 243 67.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.3e-81 307.0 244 63.9
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-81 306.2 240 65.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.1e-80 303.9 248 66.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.1e-80 303.9 241 64.7
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.4e-80 303.5 248 62.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.4e-80 301.6 244 67.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.6e-79 300.1 243 65.4
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.7e-79 299.3 250 66.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.7e-79 299.3 248 62.9
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.5e-79 298.9 243 65.8
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.5e-79 298.9 241 66.8
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.7e-78 296.6 246 63.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-78 295.0 240 63.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-78 295.0 240 63.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.9e-77 293.1 250 62.0
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.9e-77 293.1 243 64.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.3e-77 292.4 243 64.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.3e-77 292.0 243 64.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 4.3e-77 292.0 243 64.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 5.6e-77 291.6 241 64.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.3e-77 291.2 242 63.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.2e-76 290.4 247 61.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.1e-76 289.7 246 61.8
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 3.6e-76 288.9 244 63.9
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 3.6e-76 288.9 247 61.5
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 4.7e-76 288.5 242 60.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 6.2e-76 288.1 221 69.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.1e-75 287.3 246 63.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.1e-75 287.3 242 64.0
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.4e-75 287.0 244 63.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.4e-75 287.0 244 64.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.8e-75 286.6 242 64.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.3e-75 286.2 258 63.6
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.1e-75 285.8 244 63.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.1e-75 285.8 244 63.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.0e-75 285.4 245 60.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.0e-75 285.4 245 60.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 4.0e-75 285.4 245 60.8
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.2e-75 285.0 238 60.5
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 5.2e-75 285.0 240 62.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.8e-75 284.6 243 60.9
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.8e-75 284.6 176 78.4
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.9e-75 284.3 205 70.2
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 8.9e-75 284.3 240 62.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 8.9e-75 284.3 240 62.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-74 283.5 181 75.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.0e-74 283.1 244 62.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.0e-74 283.1 181 75.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.4e-74 282.3 181 75.1
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 5.8e-74 281.6 246 62.2
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.8e-74 281.6 243 60.5
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 9.8e-74 280.8 242 63.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-73 280.4 243 61.7
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 2.2e-73 279.6 243 61.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.2e-73 279.6 243 61.7
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-73 279.3 244 62.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-73 279.3 244 61.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.9e-73 279.3 237 60.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 3.7e-73 278.9 177 74.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 4.9e-73 278.5 243 61.7
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 4.9e-73 278.5 243 61.7
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 4.9e-73 278.5 239 59.8
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 6.4e-73 278.1 240 59.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.4e-72 276.9 244 61.9
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.9e-72 276.6 241 61.8
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 3.2e-72 275.8 244 61.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 3.2e-72 275.8 244 61.5
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.2e-72 275.8 255 56.1
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 4.1e-72 275.4 255 55.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.4e-72 275.0 181 73.5
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 5.4e-72 275.0 176 75.0
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 5.4e-72 275.0 238 61.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.1e-72 274.6 176 76.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 9.2e-72 274.2 255 59.2
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.2e-71 273.9 179 73.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.6e-71 273.5 241 61.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 3.5e-71 272.3 250 60.0
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.0e-70 270.8 242 58.3
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 247 59.9
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.1e-69 267.3 163 79.1
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.5e-69 266.9 240 60.4
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.5e-69 266.9 228 62.7
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.5e-69 266.9 256 57.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.8e-68 262.7 233 60.1
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.7e-68 261.9 170 72.9
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 8.1e-68 261.2 245 57.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.0e-67 258.8 182 69.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.2e-67 258.5 235 56.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.5e-66 256.9 234 59.8
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.4e-66 255.4 161 75.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.3e-65 253.8 240 55.0
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.9e-65 251.9 240 55.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.4e-65 251.5 150 80.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 3.2e-64 249.2 244 54.9
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 5.4e-64 248.4 238 57.1
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.1e-64 248.1 229 56.3
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-63 246.9 224 59.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.5e-63 245.7 247 55.1
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-63 245.4 147 80.3
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.0e-62 244.2 166 71.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.0e-62 244.2 232 56.0
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.3e-62 243.0 234 56.0
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.9e-62 242.3 176 65.3
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.5e-61 240.4 242 54.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 7.3e-61 238.0 225 57.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 3.6e-60 235.7 229 53.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.9e-57 226.1 166 65.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.4e-57 224.6 164 70.1
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.9e-56 223.4 211 55.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.6e-55 218.8 173 59.5
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.1e-54 215.3 232 50.4
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.1e-53 214.2 173 57.8
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-52 209.5 163 65.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.8e-52 208.8 132 73.5
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.2e-52 208.4 244 48.4
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.8e-46 190.3 112 78.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.7e-46 188.0 147 66.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-39 167.2 110 69.1
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.5e-37 159.8 212 40.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 5.8e-34 148.7 150 51.3
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 4.2e-32 142.5 231 36.4
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 6.7e-30 135.2 224 35.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 8.7e-30 134.8 161 44.1
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-27 127.1 76 78.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 4.1e-27 125.9 156 41.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.4e-19 100.1 150 38.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 9.1e-19 98.2 105 51.4
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.6e-18 96.7 86 57.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 5.1e-14 82.4 87 46.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.3e-09 67.8 53 56.6
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.3e-09 67.8 53 56.6
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 2.9e-09 66.6 65 50.8


User provided reference genes

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