Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 2.1e-120 435.6 215 100.0
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 5.3e-79 298.1 159 88.7
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.3e-69 266.9 159 79.2
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 2.9e-69 265.8 159 78.6
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 6.5e-69 264.6 159 78.0
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.6e-59 233.4 154 72.1
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.6e-59 232.3 154 72.1
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 4.7e-59 231.9 154 72.1
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 1.2e-54 217.2 165 64.8
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.0e-53 214.2 159 64.8
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 1.5e-52 210.3 159 62.3
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 3.1e-50 202.6 153 64.7
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 6.8e-50 201.4 153 64.1
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 1.2e-49 200.7 158 62.7
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 2.6e-49 199.5 157 64.3
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 7.5e-49 198.0 160 61.9
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 3.7e-48 195.7 154 62.3
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 3.7e-48 195.7 154 62.3
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 8.3e-48 194.5 161 59.6
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.2e-46 190.7 160 59.4
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.6e-46 190.3 156 60.3
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 1.6e-46 190.3 155 59.4
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 3.5e-46 189.1 154 60.4
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 1.7e-45 186.8 154 59.7
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 2.3e-45 186.4 156 61.5
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.9e-45 185.7 155 60.6
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 2.5e-44 183.0 150 60.7
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 3.3e-44 182.6 155 58.1
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 4.3e-44 182.2 167 55.7
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 9.5e-44 181.0 156 59.0
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 9.5e-44 181.0 151 60.9
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 1.6e-43 180.3 150 60.7
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 3.6e-43 179.1 157 56.7
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 3.6e-43 179.1 151 56.3
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 4.0e-42 175.6 160 55.6
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 5.2e-42 175.3 157 58.0
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 8.9e-42 174.5 151 58.3
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 2.0e-41 173.3 161 55.9
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 2.0e-41 173.3 161 55.9
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 4.4e-41 172.2 159 57.9
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 4.4e-41 172.2 160 58.1
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 2.2e-40 169.9 142 59.9
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 2.9e-40 169.5 156 54.5
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 3.7e-40 169.1 157 56.1
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 1.4e-39 167.2 157 56.7
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.9e-39 166.8 157 56.1
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 2.4e-39 166.4 159 53.5
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 5.4e-39 165.2 160 51.9
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 5.4e-39 165.2 158 55.1
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.2e-38 164.1 156 51.9
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 2.1e-38 163.3 159 54.1
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.1e-38 163.3 157 52.9
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 2.7e-38 162.9 155 54.2
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.3e-37 160.6 157 52.2
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 5.1e-37 158.7 141 53.2
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 6.6e-37 158.3 156 52.6
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 1.1e-36 157.5 167 53.9
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 1.5e-36 157.1 158 55.1
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 4.3e-36 155.6 161 50.3
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 4.3e-36 155.6 166 52.4
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 5.6e-36 155.2 158 52.5
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 7.3e-36 154.8 163 52.8
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 9.5e-36 154.5 163 50.3
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 1.2e-35 154.1 156 51.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 2.1e-35 153.3 152 52.6
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 2.8e-35 152.9 155 52.9
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 3.6e-35 152.5 157 51.0
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 4.7e-35 152.1 164 52.4
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 6.2e-35 151.8 148 50.0
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.4e-34 150.6 161 47.8
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.4e-34 150.6 161 47.8
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 2.3e-34 149.8 157 52.2
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 2.3e-34 149.8 160 51.2
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 5.2e-34 148.7 163 48.5
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 8.9e-34 147.9 159 47.2
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 8.9e-34 147.9 179 49.2
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 1.2e-33 147.5 161 48.4
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 1.5e-33 147.1 161 48.4
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 1.5e-33 147.1 161 49.1
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.6e-33 146.4 159 47.8
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 4.4e-33 145.6 179 48.0
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 7.6e-33 144.8 212 41.5
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 9.9e-33 144.4 158 48.7
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 1.3e-32 144.1 159 48.4
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 1.3e-32 144.1 150 51.3
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 2.2e-32 143.3 156 48.7
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 1.9e-31 140.2 164 48.8
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 3.2e-31 139.4 161 47.8
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 4.1e-31 139.0 168 45.8
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 5.4e-31 138.7 211 40.3
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 5.4e-31 138.7 148 49.3
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 7.1e-31 138.3 162 47.5
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 9.2e-31 137.9 156 46.2
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 1.6e-30 137.1 164 45.7
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 6.0e-30 135.2 157 46.5
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 6.6e-29 131.7 155 46.5
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 1.1e-28 131.0 116 56.9
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 1.5e-28 130.6 154 50.6
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 2.5e-28 129.8 161 43.5
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 7.3e-28 128.3 158 43.7
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 3.6e-27 125.9 160 43.8
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 1.4e-26 124.0 149 45.6
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 3.1e-26 122.9 160 45.0
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 1.5e-25 120.6 160 46.2
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.7e-24 117.1 117 56.4
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 1.7e-24 117.1 158 43.0
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 6.4e-24 115.2 152 45.4
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 2.4e-23 113.2 162 43.8
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 1.0e-21 107.8 159 42.1
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 2.3e-21 106.7 155 43.2
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.3e-19 100.9 102 56.9
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 8.1e-19 98.2 150 40.7
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 5.8e-17 92.0 148 41.9
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 5.8e-17 92.0 148 41.9
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 8.4e-16 88.2 120 44.2
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.3e-13 80.1 177 32.2
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 3.0e-13 79.7 179 33.0
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 1.3e-11 74.3 151 35.8
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 4.0e-10 69.3 154 33.1
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 4.0e-10 69.3 191 29.8
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 1.4e-07 60.8 33 72.7
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 2.4e-07 60.1 48 58.3
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 1.6e-06 57.4 43 62.8
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 3.5e-06 56.2 40 67.5


User provided reference genes

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