Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G009500 Theobroma cacao HOM05D000955 ORTHO05D025176 8.8e-44 179.9 89 100.0
COL.COLO4_26492 Corchorus olitorius HOM05D035470 ORTHO05D025176 9.1e-25 116.7 81 72.8
Gohir.A08G147600 Gossypium hirsutum HOM05D020587 ORTHO05D025176 5.0e-23 110.9 84 66.7
Gorai.004G176100 Gossypium raimondii HOM05D035470 ORTHO05D025176 8.5e-23 110.2 84 69.0
Gohir.D08G168800 Gossypium hirsutum HOM05D035470 ORTHO05D025176 1.1e-22 109.8 84 69.0
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 4.9e-10 67.8 73 43.8
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 4.9e-10 67.8 73 45.2
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 6.3e-10 67.4 73 42.5
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.8e-09 65.9 68 45.6
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.1e-09 65.1 87 37.9
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 5.4e-09 64.3 73 39.7
Sed0021895 Sechium edule HOM05D000955 ORTHO05D001429 5.4e-09 64.3 69 43.5
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 9.2e-09 63.5 73 39.7
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 1.2e-08 63.2 74 43.2
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 1.6e-08 62.8 74 43.2
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.6e-08 62.8 73 39.7
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 2.0e-08 62.4 72 45.8
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.0e-08 62.4 75 41.3
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 2.7e-08 62.0 73 42.5
COL.COLO4_17164 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.7e-08 62.0 90 42.2
Manes.05G172801 Manihot esculenta HOM05D000955 ORTHO05D001429 2.7e-08 62.0 82 36.6
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.5e-08 61.6 76 42.1
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.5e-08 61.2 74 41.9
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 4.5e-08 61.2 74 41.9
Sed0010424 Sechium edule HOM05D000955 ORTHO05D001429 4.5e-08 61.2 69 42.0
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 5.9e-08 60.8 73 39.7
Atru.chr13.678 Acer truncatum HOM05D000955 ORTHO05D001429 7.8e-08 60.5 72 43.1
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 7.8e-08 60.5 74 41.9
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 7.8e-08 60.5 74 41.9
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.8e-08 60.5 74 43.2
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.8e-08 60.5 74 43.2
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 7.8e-08 60.5 73 39.7
Thecc.04G032100 Theobroma cacao HOM05D000955 ORTHO05D001429 1.0e-07 60.1 72 44.4
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.3e-07 59.7 85 38.8
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 1.3e-07 59.7 67 44.8
Sed0019585 Sechium edule HOM05D000955 ORTHO05D001429 1.3e-07 59.7 69 39.1
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.7e-07 59.3 71 40.8
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.7e-07 59.3 71 42.3
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-07 59.3 74 41.9
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-07 59.3 85 37.6
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 1.7e-07 59.3 70 40.0
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.7e-07 59.3 91 37.4
ClCG08G015850 Citrullus lanatus HOM05D000955 ORTHO05D001429 2.3e-07 58.9 69 39.1
COL.COLO4_26491 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.3e-07 58.9 74 40.5
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 2.3e-07 58.9 77 41.6
Manes.05G173400 Manihot esculenta HOM05D000955 ORTHO05D001429 2.3e-07 58.9 75 38.7
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 2.3e-07 58.9 75 41.3
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 2.3e-07 58.9 71 40.8
TWI36G1691 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 2.3e-07 58.9 79 40.5
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.9e-07 58.5 72 41.7
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 2.9e-07 58.5 84 36.9
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.9e-07 58.5 74 41.9
Thecc.08G009600 Theobroma cacao HOM05D000955 ORTHO05D001429 2.9e-07 58.5 74 36.5
CAN.G371.26 Capsicum annuum HOM05D000955 ORTHO05D001429 3.9e-07 58.2 73 42.5
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 3.9e-07 58.2 74 35.1
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 5.0e-07 57.8 74 41.9
Manes.04G102700 Manihot esculenta HOM05D000955 ORTHO05D001429 5.0e-07 57.8 73 34.2
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 5.0e-07 57.8 82 35.4
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 5.0e-07 57.8 68 42.6
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 5.0e-07 57.8 73 34.2
Sed0024453 Sechium edule HOM05D000955 ORTHO05D001429 5.0e-07 57.8 81 37.0
Sed0026745 Sechium edule HOM05D000955 ORTHO05D001429 5.0e-07 57.8 69 39.1
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 6.6e-07 57.4 72 40.3
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 6.6e-07 57.4 74 37.8
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-07 57.4 74 40.5
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 6.6e-07 57.4 73 38.4
Thecc.08G009800 Theobroma cacao HOM05D000955 ORTHO05D001429 6.6e-07 57.4 73 38.4
Cfa018535 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.6e-07 57.0 74 40.5
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 8.6e-07 57.0 73 39.7
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 8.6e-07 57.0 75 38.7
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.1e-06 56.6 74 39.2
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.1e-06 56.6 71 39.4
Gohir.D02G091500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.1e-06 56.6 79 38.0
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.1e-06 56.6 71 40.8
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.1e-06 56.6 72 41.7
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.1e-06 56.6 72 41.7
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 1.1e-06 56.6 74 36.5
Sed0022222 Sechium edule HOM05D000955 ORTHO05D001429 1.1e-06 56.6 69 39.1
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.1e-06 56.6 72 43.1
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.1e-06 56.6 73 38.4
Gorai.005G102600 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.5e-06 56.2 79 38.0
Manes.05G172600 Manihot esculenta HOM05D000955 ORTHO05D001429 1.5e-06 56.2 74 36.5
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.5e-06 56.2 74 39.2
Sed0009648 Sechium edule HOM05D000955 ORTHO05D001429 1.5e-06 56.2 71 40.8
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 1.5e-06 56.2 75 38.7
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 1.5e-06 56.2 73 38.4
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.9e-06 55.8 69 40.6
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.9e-06 55.8 74 37.8
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.9e-06 55.8 70 38.6
MELO3C010868.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.9e-06 55.8 68 44.1
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 1.9e-06 55.8 72 40.3
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.5e-06 55.5 73 37.0
Cfa018544 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.5e-06 55.5 73 34.2
COL.COLO4_26499 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.5e-06 55.5 59 40.7
CsaV3_4G034250 Cucumis sativus L. HOM05D000955 ORTHO05D001429 2.5e-06 55.5 70 40.0
Glyma.14G082400 Glycine max HOM05D000955 ORTHO05D001429 2.5e-06 55.5 62 41.9
Gorai.005G102700 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.5e-06 55.5 69 39.1
Nitab4.5_0001847g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.5e-06 55.5 75 38.7
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 2.5e-06 55.5 92 37.0
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 3.3e-06 55.1 86 37.2
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 3.3e-06 55.1 71 38.0
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.3e-06 55.1 75 37.3
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.3e-06 55.1 74 37.8
Prupe.1G436900 Prunus persica HOM05D000955 ORTHO05D001429 3.3e-06 55.1 69 46.4
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 3.3e-06 55.1 72 33.3
Sed0009213 Sechium edule HOM05D000955 ORTHO05D001429 3.3e-06 55.1 70 38.6
Sed0023504 Sechium edule HOM05D000955 ORTHO05D001429 3.3e-06 55.1 70 38.6
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 3.3e-06 55.1 74 36.5
Actinidia22623 Actinidia chinensis HOM05D000955 ORTHO05D001429 4.3e-06 54.7 70 40.0
Cpa.g.sc49.10 Carica papaya HOM05D000955 ORTHO05D001429 4.3e-06 54.7 73 34.2
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.3e-06 54.7 72 36.1
ClCG08G015790 Citrullus lanatus HOM05D000955 ORTHO05D001429 4.3e-06 54.7 70 41.4
ClCG08G015860 Citrullus lanatus HOM05D000955 ORTHO05D001429 4.3e-06 54.7 68 42.6
Manes.05G173100 Manihot esculenta HOM05D000955 ORTHO05D001429 4.3e-06 54.7 82 37.8
Potri.008G079066 Populus trichocarpa HOM05D000955 ORTHO05D001429 4.3e-06 54.7 75 38.7
Prupe.1G437100 Prunus persica HOM05D000955 ORTHO05D001429 4.3e-06 54.7 69 44.9
Sed0014774 Sechium edule HOM05D000955 ORTHO05D001429 4.3e-06 54.7 70 40.0
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 5.6e-06 54.3 71 38.0
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.6e-06 54.3 73 38.4
Dinv29919 Davidia involucrata HOM05D000955 ORTHO05D001429 5.6e-06 54.3 68 45.6
Manes.04G102900 Manihot esculenta HOM05D000955 ORTHO05D001429 5.6e-06 54.3 73 30.1
Nitab4.5_0013573g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.6e-06 54.3 62 41.9
Phvul.001G021700 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 5.6e-06 54.3 72 37.5
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 5.6e-06 54.3 75 36.0
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 5.6e-06 54.3 70 37.1
Sed0013848 Sechium edule HOM05D000955 ORTHO05D001429 5.6e-06 54.3 70 38.6
Sed0019911 Sechium edule HOM05D000955 ORTHO05D001429 5.6e-06 54.3 68 41.2
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 7.3e-06 53.9 71 38.0
CsaV3_2G027870 Cucumis sativus L. HOM05D000955 ORTHO05D001429 7.3e-06 53.9 68 42.6
CsaV3_5G015470 Cucumis sativus L. HOM05D000955 ORTHO05D001429 7.3e-06 53.9 83 36.1
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 7.3e-06 53.9 75 37.3
Gohir.A03G076800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.3e-06 53.9 74 37.8
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 7.3e-06 53.9 73 37.0
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 9.5e-06 53.5 74 37.8
MELO3C016745.2 Cucumis melo HOM05D000955 ORTHO05D001429 9.5e-06 53.5 70 40.0
Gohir.A03G076900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 9.5e-06 53.5 69 37.7
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 9.5e-06 53.5 71 39.4
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.5e-06 53.5 74 37.8
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.5e-06 53.5 74 36.5
Sed0008843 Sechium edule HOM05D000955 ORTHO05D001429 9.5e-06 53.5 72 38.9
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 9.5e-06 53.5 55 47.3
Sopen04g032680 Solanum pennellii HOM05D000955 ORTHO05D001429 9.5e-06 53.5 55 47.3
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 9.5e-06 53.5 71 38.0


User provided reference genes

Program Settings