Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.3e-148 529.6 256 100.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.2e-131 471.5 256 87.1
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.5e-123 444.5 256 82.4
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.4e-123 443.7 256 82.4
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.4e-123 443.7 256 82.4
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.6e-120 435.6 256 82.4
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.4e-113 413.3 256 78.1
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.8e-113 410.6 256 77.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 3.7e-103 378.6 258 72.1
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 6.3e-103 377.9 253 73.5
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 6.3e-103 377.9 255 73.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.1e-102 374.0 257 69.3
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 5.9e-101 371.3 259 71.4
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.0e-100 370.5 256 69.5
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.9e-100 369.0 252 71.8
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.2e-99 365.5 242 72.3
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 9.4e-99 364.0 258 72.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.6e-98 363.2 252 69.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.7e-98 362.5 249 69.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.7e-98 361.7 252 71.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 6.1e-98 361.3 251 68.9
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 6.1e-98 361.3 252 70.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.0e-97 360.5 257 70.8
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.8e-97 359.8 258 69.4
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 6.8e-97 357.8 258 70.2
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.5e-96 356.7 258 69.4
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-96 356.7 258 69.4
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-96 356.3 256 69.5
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 7.5e-96 354.4 254 69.3
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.8e-95 352.4 256 68.4
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.8e-95 352.4 258 69.0
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.8e-95 352.4 258 64.7
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.7e-95 352.1 256 68.4
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.8e-95 351.7 240 70.0
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-94 350.5 256 68.0
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.4e-94 349.4 244 70.1
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.2e-93 347.1 257 68.1
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 7.7e-93 344.4 258 67.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.3e-92 343.6 243 67.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.3e-92 343.6 258 66.7
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.7e-92 343.2 256 65.6
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.7e-92 343.2 256 64.8
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.3e-92 342.8 257 67.3
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.8e-92 342.0 245 66.5
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 6.6e-92 341.3 253 65.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-91 340.5 252 66.3
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-91 339.7 256 67.2
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.5e-91 339.3 266 66.2
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 3.3e-91 339.0 259 66.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.5e-91 338.2 256 65.6
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.2e-90 337.0 257 66.5
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.2e-90 337.0 255 66.7
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 3.6e-90 335.5 257 63.8
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 6.1e-90 334.7 264 64.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 8.0e-90 334.3 257 65.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 8.0e-90 334.3 251 66.5
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.4e-89 333.6 256 63.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.0e-89 332.0 250 66.4
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.9e-89 330.9 291 59.1
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.6e-88 329.3 269 62.1
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.4e-88 328.9 256 64.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 7.5e-88 327.8 260 63.5
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 7.5e-88 327.8 261 62.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.3e-87 327.0 257 62.6
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.3e-87 327.0 263 63.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-87 326.6 250 65.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.7e-87 326.6 183 81.4
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.2e-87 326.2 258 64.0
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 6.3e-87 324.7 258 62.8
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.4e-86 323.6 256 65.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.4e-86 323.6 256 61.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.4e-86 322.8 258 62.4
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.4e-86 322.8 258 66.7
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 4.1e-86 322.0 251 61.8
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.4e-86 321.6 261 62.5
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 9.2e-86 320.9 251 60.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 9.2e-86 320.9 177 84.2
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.6e-85 320.1 256 60.5
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 2.0e-85 319.7 264 60.2
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.7e-85 319.3 258 62.8
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 4.5e-85 318.5 250 64.4
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-84 317.4 257 60.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.3e-84 317.0 261 61.7
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.3e-84 316.2 258 61.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.9e-84 315.8 258 60.5
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.8e-84 315.5 264 60.2
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.5e-83 313.5 260 60.4
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.3e-83 312.0 250 60.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.2e-82 310.5 260 59.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.8e-82 309.3 254 62.2
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 4.7e-82 308.5 250 63.6
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 4.7e-82 308.5 261 58.2
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.7e-82 308.5 254 62.2
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.7e-82 308.5 248 62.1
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 6.1e-82 308.1 246 61.8
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.0e-81 307.4 258 60.1
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.4e-81 307.0 264 60.6
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.3e-81 306.2 259 59.8
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 4.0e-81 305.4 257 59.9
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 4.0e-81 305.4 252 61.1
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 5.2e-81 305.1 175 80.6
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.8e-81 304.7 253 62.1
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.8e-81 304.7 253 62.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 5.8e-80 301.6 251 59.4
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.7e-79 300.1 215 66.5
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.7e-79 300.1 251 59.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.2e-79 299.7 222 64.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.2e-79 299.7 245 60.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.2e-79 299.7 245 60.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.7e-79 298.9 259 57.9
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 8.3e-79 297.7 262 57.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.1e-78 297.4 249 60.2
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 7.0e-78 294.7 175 79.4
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.6e-77 293.5 216 66.7
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.5e-77 292.4 205 67.8
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 3.5e-77 292.4 251 56.6
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 6.0e-77 291.6 216 66.7
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.3e-76 290.4 254 58.3
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 3.9e-76 288.9 247 59.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.9e-75 286.6 232 62.9
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 4.3e-75 285.4 247 58.7
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.6e-75 285.0 251 55.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 4.7e-74 282.0 258 56.2
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.0e-72 276.6 258 55.4
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 6.4e-71 271.6 253 57.3
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.9e-70 270.0 150 84.0
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.3e-68 263.8 217 61.8
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.3e-68 263.1 146 84.9
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.2e-64 250.8 261 51.7
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.4e-64 249.2 261 50.6
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 7.5e-64 248.1 217 57.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.7e-63 246.9 255 53.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.4e-62 243.8 137 81.0
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.2e-61 240.7 256 50.0
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.6e-59 231.9 160 71.2
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 8.1e-58 228.0 255 49.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 8.4e-55 218.0 166 59.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.9e-54 216.9 164 61.0
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.2e-54 215.7 144 68.1
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.6e-53 212.2 164 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.7e-52 210.3 170 58.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.5e-51 206.5 111 84.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.1e-50 203.4 166 56.6
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.4e-49 200.7 167 54.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.3e-36 156.8 215 43.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 5.1e-36 155.6 143 58.7
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 6.9e-33 145.2 90 74.4
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.8e-31 139.4 84 76.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.5e-29 132.9 130 55.4
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.6e-29 132.5 82 70.7
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.6e-29 132.5 93 65.6
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.6e-26 124.0 213 32.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.6e-24 116.7 63 85.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.9e-23 112.5 71 70.4
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.5e-22 109.0 78 67.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.1e-22 108.6 137 40.9
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 9.3e-22 108.2 65 75.4
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.7e-19 99.0 65 69.2
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.2e-18 97.1 100 48.0
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-16 90.1 86 54.7
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.9e-15 86.7 52 76.9
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.4e-14 84.3 39 92.3
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.7e-13 80.1 52 73.1
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 3.6e-13 79.7 46 76.1
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.4e-12 77.8 51 72.5
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.3e-10 68.9 43 76.7
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.4e-09 67.0 36 80.6
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.2e-06 56.6 118 33.1


User provided reference genes

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