Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.7e-88 329.3 172 100.0
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 7.6e-68 260.8 174 77.0
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 4.6e-65 251.5 174 76.4
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.3e-64 250.0 177 72.9
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.3e-64 249.2 172 73.3
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 6.6e-64 247.7 179 72.6
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.1e-58 230.3 205 62.4
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.4e-53 213.4 179 62.6
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 5.3e-53 211.5 171 64.9
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.2e-52 210.3 175 64.0
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.2e-52 210.3 175 64.0
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.5e-52 209.9 175 62.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.8e-52 208.0 175 63.4
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 7.6e-52 207.6 170 61.8
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-51 206.8 175 62.9
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.9e-51 205.7 175 63.4
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 3.8e-51 205.3 174 62.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 6.4e-51 204.5 171 63.7
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.4e-50 203.4 167 64.1
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 5.4e-50 201.4 170 62.4
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 7.1e-50 201.1 174 60.3
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 9.3e-50 200.7 172 61.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 6.0e-49 198.0 175 61.1
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.0e-48 197.2 172 60.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 6.7e-48 194.5 169 61.5
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.1e-47 193.7 165 60.6
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.9e-47 193.0 151 62.9
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.9e-47 193.0 151 62.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.5e-47 192.6 162 59.9
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.5e-47 192.6 164 58.5
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 2.5e-47 192.6 160 61.9
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 4.3e-47 191.8 142 66.9
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 9.6e-47 190.7 148 65.5
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.3e-46 190.3 168 58.9
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.1e-46 189.5 169 59.2
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.1e-46 189.5 169 61.5
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.8e-46 189.1 172 61.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 4.8e-46 188.3 138 67.4
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 6.2e-46 188.0 174 59.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 6.2e-46 188.0 171 58.5
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.1e-45 187.2 171 57.3
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.4e-45 186.8 169 58.6
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.4e-45 186.8 179 54.7
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 3.1e-45 185.7 176 57.4
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 4.0e-45 185.3 172 57.6
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.0e-45 185.3 171 57.3
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.9e-45 184.5 172 59.9
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 9.0e-45 184.1 169 57.4
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 7.6e-44 181.0 146 63.0
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 7.6e-44 181.0 172 57.6
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 9.9e-44 180.6 168 58.3
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 8.4e-43 177.6 175 56.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.9e-42 176.4 181 53.6
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.4e-42 176.0 148 60.1
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 2.4e-42 176.0 168 54.2
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 3.2e-42 175.6 168 53.6
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 3.2e-42 175.6 173 52.6
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 3.2e-42 175.6 160 56.9
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 5.5e-42 174.9 173 53.8
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 9.3e-42 174.1 148 59.5
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.2e-41 173.7 170 56.5
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.2e-41 173.7 179 52.0
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-41 173.3 147 59.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.6e-41 173.3 150 58.7
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.6e-41 173.3 235 43.0
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.6e-41 173.3 177 53.1
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.7e-41 172.6 145 59.3
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.7e-41 172.6 145 59.3
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.7e-41 172.6 176 55.1
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 4.6e-41 171.8 142 59.9
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.6e-41 171.8 143 60.1
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 7.9e-41 171.0 145 58.6
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 7.9e-41 171.0 147 58.5
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 7.9e-41 171.0 152 59.2
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.0e-40 170.6 146 58.2
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.8e-40 169.9 172 51.2
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.8e-40 169.9 145 58.6
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.8e-40 169.9 176 56.2
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.3e-40 169.5 157 56.1
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 3.0e-40 169.1 179 50.8
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.9e-40 168.7 119 70.6
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 5.1e-40 168.3 144 60.4
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.1e-40 168.3 177 55.4
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 5.1e-40 168.3 166 53.6
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 8.7e-40 167.5 147 56.5
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 8.7e-40 167.5 174 52.9
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.5e-39 166.0 149 55.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 7.4e-39 164.5 183 49.7
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.3e-38 163.7 153 58.8
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 2.8e-38 162.5 142 57.7
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 3.7e-38 162.2 149 55.0
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 4.8e-38 161.8 171 55.6
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 6.2e-38 161.4 171 54.4
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.1e-37 160.6 173 51.4
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.1e-37 160.6 185 47.0
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.4e-37 160.2 272 37.5
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.8e-37 159.8 171 52.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.8e-37 159.8 181 53.6
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.8e-37 159.8 171 53.2
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 3.1e-37 159.1 166 51.2
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 4.0e-37 158.7 145 54.5
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 9.0e-37 157.5 176 49.4
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.2e-36 157.1 142 55.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.6e-36 156.0 171 50.9
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.4e-36 155.6 172 47.7
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.8e-36 154.8 144 54.9
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.2e-34 148.7 169 46.7
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 5.5e-34 148.3 142 51.4
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.1e-33 146.4 139 55.4
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.5e-33 145.6 122 63.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 4.6e-33 145.2 174 50.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 4.3e-31 138.7 118 57.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.3e-30 137.1 231 40.3
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.8e-30 135.2 124 55.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.8e-30 135.2 115 60.0
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-28 129.8 117 56.4
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 3.4e-28 129.0 151 47.0
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.9e-26 123.2 151 45.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 5.5e-26 121.7 146 43.8
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 5.5e-26 121.7 146 43.8
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.6e-25 120.2 120 50.8
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 3.6e-25 119.0 152 44.7
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.0e-24 117.5 138 44.9
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 3.0e-24 115.9 178 43.3
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 9.7e-23 110.9 161 42.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 2.8e-22 109.4 128 48.4
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 2.8e-22 109.4 128 48.4
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 6.9e-21 104.8 179 35.8
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.0e-19 98.6 118 47.5
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.0e-19 98.6 100 50.0
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 5.0e-19 98.6 265 29.4
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 7.2e-18 94.7 107 46.7
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.0e-16 90.9 168 36.3
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 8.2e-14 81.3 86 50.0
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-11 73.9 83 49.4
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-11 73.2 93 46.2
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.2e-11 73.2 93 46.2
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.9e-11 72.8 115 41.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.9e-11 72.8 83 49.4
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-10 70.9 83 49.4
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 4.2e-10 68.9 79 50.6
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 4.2e-10 68.9 79 50.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.8e-08 63.5 58 55.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 7.4e-07 58.2 48 58.3


User provided reference genes

Program Settings