Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 6.7e-105 384.0 194 100.0
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 2.4e-86 322.4 197 85.8
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.8e-79 298.9 193 79.3
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 3.7e-79 298.5 193 79.3
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 4.8e-79 298.1 192 78.6
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.5e-64 250.0 193 68.9
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 9.1e-62 240.7 198 66.2
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 2.0e-61 239.6 193 65.3
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 4.2e-59 231.9 190 65.8
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 5.5e-59 231.5 198 65.7
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 7.2e-59 231.1 193 62.2
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 4.7e-58 228.4 194 64.9
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.8e-57 226.5 194 63.4
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 8.8e-57 224.2 191 62.3
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 5.7e-56 221.5 197 62.9
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 2.2e-55 219.5 148 79.1
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 8.3e-55 217.6 170 67.6
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.8e-54 216.5 191 62.3
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 1.0e-52 210.7 192 62.5
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 2.3e-52 209.5 197 61.9
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 5.6e-51 204.9 193 59.1
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 9.5e-51 204.1 194 60.3
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 2.8e-50 202.6 192 60.9
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 1.5e-48 196.8 193 58.0
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.6e-48 196.1 194 57.2
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.4e-48 195.7 193 58.0
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 4.4e-48 195.3 189 58.2
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 1.7e-47 193.4 193 58.0
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.7e-47 192.2 193 54.9
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 4.9e-47 191.8 192 59.4
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 8.3e-47 191.0 193 55.4
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 1.8e-46 189.9 197 57.4
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 1.8e-46 189.9 191 55.5
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 3.2e-46 189.1 189 56.1
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 4.1e-46 188.7 192 54.2
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 9.2e-46 187.6 192 55.2
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.2e-45 187.2 195 56.9
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 4.6e-45 185.3 196 56.1
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 5.9e-45 184.9 210 49.0
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.3e-44 183.7 194 55.2
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 3.0e-44 182.6 189 55.6
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 6.6e-44 181.4 194 53.6
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.9e-43 179.9 194 53.1
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 4.3e-43 178.7 200 52.0
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 5.6e-43 178.3 192 53.6
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.2e-42 177.2 193 52.3
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 1.2e-42 177.2 217 49.3
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 3.6e-42 175.6 194 54.1
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 6.8e-41 171.4 192 51.6
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 8.9e-41 171.0 135 71.9
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 8.9e-41 171.0 194 56.7
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 1.5e-40 170.2 194 55.7
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 4.4e-40 168.7 199 49.2
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.8e-40 168.3 194 51.5
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 7.5e-40 167.9 192 53.6
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 3.7e-39 165.6 193 52.3
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 6.4e-39 164.9 188 51.1
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 6.4e-39 164.9 188 51.1
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.9e-38 163.3 186 55.9
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.2e-38 162.5 192 52.6
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 3.2e-38 162.5 193 51.8
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 5.4e-38 161.8 192 52.6
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 9.2e-38 161.0 186 55.4
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 1.0e-36 157.5 192 51.0
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 2.3e-36 156.4 194 52.6
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 3.0e-36 156.0 189 51.3
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 3.9e-36 155.6 189 52.4
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 6.6e-36 154.8 193 51.3
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 6.6e-36 154.8 195 50.3
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 6.6e-36 154.8 189 51.9
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 4.3e-35 152.1 189 50.8
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 5.6e-35 151.8 193 51.3
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 9.5e-35 151.0 120 68.3
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 3.6e-34 149.1 193 50.3
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 8.1e-34 147.9 194 49.5
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.4e-33 147.1 193 47.7
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 5.2e-33 145.2 136 61.8
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.5e-32 143.7 188 43.1
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 7.1e-30 134.8 199 46.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 9.2e-30 134.4 193 46.1
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 2.7e-29 132.9 202 46.5
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.7e-29 132.9 198 47.0
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 4.6e-29 132.1 82 81.7
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 4.6e-29 132.1 194 47.4
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.0e-28 131.0 203 43.8
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 3.9e-28 129.0 247 40.5
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 8.6e-28 127.9 206 44.2
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 1.5e-27 127.1 128 55.5
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.5e-27 127.1 214 40.2
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.3e-27 125.9 196 43.9
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 5.6e-27 125.2 216 44.0
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 7.3e-27 124.8 132 56.8
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 9.5e-27 124.4 132 56.1
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.1e-26 123.2 133 51.9
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.1e-25 120.9 133 52.6
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 6.8e-25 118.2 188 42.0
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 3.4e-24 115.9 80 75.0
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 3.2e-22 109.4 191 37.7
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 7.1e-22 108.2 211 42.2
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.6e-21 107.1 82 65.9
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.3e-20 103.2 93 60.2
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-19 100.9 192 39.6
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 5.6e-19 98.6 194 39.7
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.3e-19 98.2 187 41.7
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 7.3e-19 98.2 190 34.7
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 6.2e-18 95.1 194 38.7
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 3.0e-12 76.3 83 55.4
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 3.3e-11 72.8 124 44.4
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 1.8e-09 67.0 56 58.9
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 6.9e-09 65.1 55 61.8
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.2e-08 64.3 108 42.6
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.5e-08 63.9 126 38.9
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 1.1e-06 57.8 90 42.2
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-06 57.4 77 40.3
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.2e-06 55.8 179 29.6


User provided reference genes

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